PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G15333
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 268aa    MW: 28798.2 Da    PI: 6.8474
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G15333genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601361.3e-428106199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh+++Gasnv k+l++l++ +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql+++l  +k
  Ro03_G15333   8 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHRVYGASNVAKILNELNTAHREDAVTSLAYEAEARLRDPVYGCVGFISILQNRLKQLQTDLFNAK 105
                  7*******************************************************************************************998777 PP

       DUF260  99 e 99 
                  +
  Ro03_G15333 106 K 106
                  6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MSSNTHSPCA ACKFLRRKCT QECVFAPYFP PDQPQKFANV HRVYGASNVA KILNELNTAH  60
REDAVTSLAY EAEARLRDPV YGCVGFISIL QNRLKQLQTD LFNAKKDLST YIGPQALMIP  120
VFHGSHQPEM NGGAMSVPML GVPTGLQQGG PAGGQLVIRD QQQQHQQMFE AQQQEMVRFN  180
VNGMDSGNGF NQMAGGGGGG GGGGSNGVVS AGSLGLGGFD NNAAFNNQMQ AAAAAHHHQH  240
SLDYQLQAQL MLQPQQQSQP KSEEIEGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.14e-64LBD family protein