PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G15333 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 268aa MW: 28798.2 Da PI: 6.8474 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136 | 1.3e-42 | 8 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh+++Gasnv k+l++l++ +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql+++l +k Ro03_G15333 8 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHRVYGASNVAKILNELNTAHREDAVTSLAYEAEARLRDPVYGCVGFISILQNRLKQLQTDLFNAK 105 7*******************************************************************************************998777 PP DUF260 99 e 99 + Ro03_G15333 106 K 106 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence |
MSSNTHSPCA ACKFLRRKCT QECVFAPYFP PDQPQKFANV HRVYGASNVA KILNELNTAH 60 REDAVTSLAY EAEARLRDPV YGCVGFISIL QNRLKQLQTD LFNAKKDLST YIGPQALMIP 120 VFHGSHQPEM NGGAMSVPML GVPTGLQQGG PAGGQLVIRD QQQQHQQMFE AQQQEMVRFN 180 VNGMDSGNGF NQMAGGGGGG GGGGSNGVVS AGSLGLGGFD NNAAFNNQMQ AAAAAHHHQH 240 SLDYQLQAQL MLQPQQQSQP KSEEIEGT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 4e-64 | LBD family protein |