PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G13515

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 748aa MW: 83144.7 Da PI: 9.6952

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G13515	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.7	4.5e-09	340	374	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Ro03_G13515 340 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 374 569*****************************885 PP
2	ELK	39.9	8.6e-14	294	315	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Ro03_G13515 294 ELKGQLLRKYSGYLGSLKQEFM 315 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence
MAVAVQEKRV GNLARTVKIV EKQREIMEGG SNNGPNSSCM MSFGENSTNG GGGGGLFPMT 60 MMMPLMTTNS SHHGHNSIHS NNSPFLLLPP GHNNHQQDQN RNSSSGGSSF ILENNPAAAA 120 GCYFMDHNNH NNNGGHGSSS SSSSSSIKSK IMAHPHYHRL LAAFINCQKV GAPPEVVGRL 180 EEACASAATI GQMVSSSTGS GHGHGCLGED PALDQFMEAY CEMLIKYEQE VSKPFKEAMV 240 FLQKIESQFK ALTVSSASDS GCGEGGMERN NNGSSEEEVD VNNNLIDPQA EDRELKGQLL 300 RKYSGYLGSL KQEFMKKRKK GKLPKEARQQ LLDWWSRHYK WPYPSESQKL ALAESTGLDQ 360 KQINNWFINQ RKRHWKPSED MQFVVMDAAH PTHYYMDNTP NSPTAWLTKV FRGFTLVSDS 420 TPLNGLISIS LDFMVTAQVL SIKNLNIDFR SSAVFSCSRK LSVGYHFGVW LCLFPEGFYV 480 HLVPFWHRAA VTLQVYYIHH FALLMGLSLP LRNFRLFPRL STLTHESSGG AFPSDVLSTK 540 PVVASERKIG NYQDLVIPVT NFHNEDKGLM VLAGDVFDVP IRKDIVHRVV LWQLAKRQQG 600 THSTKTISEV SGTGRKPWNQ KGTGRARHGT LRGPQFRGGA TMHGPKPRSH AIKLNKKLLV 660 FEDLEVPTHK TKNIVNYVKQ MENTKKALVV DGGPISEKLK LATQNIHYVN VLPSIGLNVY 720 SILQHDTLVM SRDAINKIVE RMHTPINR

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence

MAVAVQEKRV GNLARTVKIV EKQREIMEGG SNNGPNSSCM MSFGENSTNG GGGGGLFPMT  60
MMMPLMTTNS SHHGHNSIHS NNSPFLLLPP GHNNHQQDQN RNSSSGGSSF ILENNPAAAA  120
GCYFMDHNNH NNNGGHGSSS SSSSSSIKSK IMAHPHYHRL LAAFINCQKV GAPPEVVGRL  180
EEACASAATI GQMVSSSTGS GHGHGCLGED PALDQFMEAY CEMLIKYEQE VSKPFKEAMV  240
FLQKIESQFK ALTVSSASDS GCGEGGMERN NNGSSEEEVD VNNNLIDPQA EDRELKGQLL  300
RKYSGYLGSL KQEFMKKRKK GKLPKEARQQ LLDWWSRHYK WPYPSESQKL ALAESTGLDQ  360
KQINNWFINQ RKRHWKPSED MQFVVMDAAH PTHYYMDNTP NSPTAWLTKV FRGFTLVSDS  420
TPLNGLISIS LDFMVTAQVL SIKNLNIDFR SSAVFSCSRK LSVGYHFGVW LCLFPEGFYV  480
HLVPFWHRAA VTLQVYYIHH FALLMGLSLP LRNFRLFPRL STLTHESSGG AFPSDVLSTK  540
PVVASERKIG NYQDLVIPVT NFHNEDKGLM VLAGDVFDVP IRKDIVHRVV LWQLAKRQQG  600
THSTKTISEV SGTGRKPWNQ KGTGRARHGT LRGPQFRGGA TMHGPKPRSH AIKLNKKLLV  660
FEDLEVPTHK TKNIVNYVKQ MENTKKALVV DGGPISEKLK LATQNIHYVN VLPSIGLNVY  720
SILQHDTLVM SRDAINKIVE RMHTPINR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	310	319	LKQEFMKKRK
2	316	320	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-131	TALE family protein