PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ro03_G13495 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 570aa MW: 61800.3 Da PI: 7.3599 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.1e-30 | 314 | 372 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Ro03_G13495 314 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQVQRCAEDRTILITTYEGNHNHP 372 7*********************************************************7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 570 aa Download sequence |
MDKGWGLTLD SDSLGFFLNK PPPTSAVNNK RTNPFAGERM FTGIEFPVKP RPADDSRVAV 60 DEVDFFSDKN NKDDHREQEL KSNNNNTSIS VKKENWSGLD AVNTGLHLVT ANTGSDQSTV 120 DDGVSSDHAD NRRAKNHELA QLQVDLQRMN AENQRLKEML GQVTNNYNAL QMHLVAVVQQ 180 QQQNQAAADQ TSQDHDQNVE GKSEEKRHEI GSSGALVPRQ FLNLGPREET KTDNEVSNSS 240 SEARTRSASP QNNVSTNGKR VGREESPESE TQGWVPNKVP KLNSPPKPID QATEATMRKA 300 RVSVRARSEA PMITDGCQWR KYGQKMAKGN PCPRAYYRCT MAIGCPVRKQ VQRCAEDRTI 360 LITTYEGNHN HPLPPAAMAM ASTTTAAASM LLSGSMSSAD GIMNPNNLLA RAILPCSSSV 420 ATISASAPFP TVTLDLTTTP PLQFQRPQQS QFQVPFPGQP QNFGSSASNP QLPPVFGQSL 480 YNQSKFSGLQ LSQELMNSSQ LAHQGQQQHS QPSSFADTVS AITADPTFTA ALAAAITSII 540 GGSSHPNNNS SSTSNNSNGA NNKIISFPGN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-125 | WRKY family protein |