PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G13081
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 271aa    MW: 30636 Da    PI: 7.6146
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G13081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.51.4e-4571382128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                  + GfrF Pt+eelv++yL++k+e+k+  ++ +vi+++diy++ePwdLpk     +++++++w+fF++ ++++a+g r+nr+t+sgyWkatg+   v+s
  Ro03_G13081   7 TTGFRFYPTEEELVSFYLNNKLESKReDSIRRVIPDLDIYSIEPWDLPKfaaeLCHGDTEQWFFFTPMQQREAQGGRPNRTTASGYWKATGSPGYVYS 104
                  68*********************9995566778***************645643344677************************************** PP

          NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +++++g+kkt+vfy+g+ap+g+kt+W m+eyr+
  Ro03_G13081 105 WDNRVIGVKKTMVFYRGKAPTGRKTKWKMNEYRA 138
                  ********************************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MDHQELTTGF RFYPTEEELV SFYLNNKLES KREDSIRRVI PDLDIYSIEP WDLPKFAAEL  60
CHGDTEQWFF FTPMQQREAQ GGRPNRTTAS GYWKATGSPG YVYSWDNRVI GVKKTMVFYR  120
GKAPTGRKTK WKMNEYRAIE GAATSASTSN SATIAIIPKL RHEFRLCRVY VVSGSSRAFD  180
RRPLEASGDA SRRQSDASRR QSDIMGASTS SSHKAAMVAE KTSSSSETPS YSGDLADLQG  240
ETSGGINSSN NWELHGDLQQ PLWEWEQLNF L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-86NAC family protein