PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G13081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | NAC | ||||||||
Protein Properties | Length: 271aa MW: 30636 Da PI: 7.6146 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.5 | 1.4e-45 | 7 | 138 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + GfrF Pt+eelv++yL++k+e+k+ ++ +vi+++diy++ePwdLpk +++++++w+fF++ ++++a+g r+nr+t+sgyWkatg+ v+s Ro03_G13081 7 TTGFRFYPTEEELVSFYLNNKLESKReDSIRRVIPDLDIYSIEPWDLPKfaaeLCHGDTEQWFFFTPMQQREAQGGRPNRTTASGYWKATGSPGYVYS 104 68*********************9995566778***************645643344677************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kkt+vfy+g+ap+g+kt+W m+eyr+ Ro03_G13081 105 WDNRVIGVKKTMVFYRGKAPTGRKTKWKMNEYRA 138 ********************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence |
MDHQELTTGF RFYPTEEELV SFYLNNKLES KREDSIRRVI PDLDIYSIEP WDLPKFAAEL 60 CHGDTEQWFF FTPMQQREAQ GGRPNRTTAS GYWKATGSPG YVYSWDNRVI GVKKTMVFYR 120 GKAPTGRKTK WKMNEYRAIE GAATSASTSN SATIAIIPKL RHEFRLCRVY VVSGSSRAFD 180 RRPLEASGDA SRRQSDASRR QSDIMGASTS SSHKAAMVAE KTSSSSETPS YSGDLADLQG 240 ETSGGINSSN NWELHGDLQQ PLWEWEQLNF L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-86 | NAC family protein |