PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10894

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 176aa MW: 19063.7 Da PI: 8.0617

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10894	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.8	6.1e-46	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal++ Ro03_G10894 15 PCAACKLLRRRCAHDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPEQQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQ 112 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Ro03_G10894 113 AE 114 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence
MKENGCSRKQ GAASPCAACK LLRRRCAHDC VFAPYFPADE PQKFANVHKV FGASNVNKML 60 QELPEQQRGD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ IDVLQTQLAL AQAEVVHLRV 120 RQTASISNHG LSPASPSNSG SPSSKFAMGS QARPIFDMDM MMDHSSLGLG ESMWSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	8e-79	LBD family protein