PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10880

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 373aa MW: 40965.1 Da PI: 8.9058

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10880	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.4	2.9e-16	22	125	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 Wt e+++Liea++ +eer ++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e ek+ ++ ++ + Ro03_G10880 22 WTVGETMVLIEAKKMDEERRIMKRsgsvsgdqgpdqtlrsiskPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVREYEKRSVVGENKELA 119 ***********95555543322245556666666777776699****************************************99777777777 PP trihelix 81 yfdqle 86 + +le Ro03_G10880 120 SYWKLE 125 777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MAEIQGGNSS TFVMRDYRKG NWTVGETMVL IEAKKMDEER RIMKRSGSVS GDQGPDQTLR 60 SISKPAELRW KWVEDYCWKK GCLRSQNQCN DKWDNLMRDY KKVREYEKRS VVGENKELAS 120 YWKLEKSERK ERNLPTNMVP QIYEALVEVV EKREMGRVVV GGASVSGSIS PNPNIGYVVE 180 RPMISGVHQS TVQLSPPPPG LQQHLIQAPP IAAIPLLTAP LAAQPPPPLP YSQPMPPTCE 240 SSDSDTSEHS DSPAKRRRRG GASGGGAGAG ADQQQGISTS GTVSASTSSE VGTAISRGAS 300 IIAEALQGCE EREERRHREI LSLHERRIQI EESKTEINRQ GISGLVDAIN KLANSIHALA 360 SNKNNNNQSS GPK

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MAEIQGGNSS TFVMRDYRKG NWTVGETMVL IEAKKMDEER RIMKRSGSVS GDQGPDQTLR  60
SISKPAELRW KWVEDYCWKK GCLRSQNQCN DKWDNLMRDY KKVREYEKRS VVGENKELAS  120
YWKLEKSERK ERNLPTNMVP QIYEALVEVV EKREMGRVVV GGASVSGSIS PNPNIGYVVE  180
RPMISGVHQS TVQLSPPPPG LQQHLIQAPP IAAIPLLTAP LAAQPPPPLP YSQPMPPTCE  240
SSDSDTSEHS DSPAKRRRRG GASGGGAGAG ADQQQGISTS GTVSASTSSE VGTAISRGAS  300
IIAEALQGCE EREERRHREI LSLHERRIQI EESKTEINRQ GISGLVDAIN KLANSIHALA  360
SNKNNNNQSS GPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	9e-59	Trihelix family protein