PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G10631
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 324aa    MW: 35319 Da    PI: 7.8197
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G10631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.92.6e-411182171100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca++C+++pyf  ++p+kf +vhk+FGasnv+kll ++ e++r da++slvyeA+ r+rdPvyG++gvi++lqqq+++l+ael++++
  Ro03_G10631 118 PCAACKLLRRRCAEECPFSPYFSPHEPHKFSAVHKVFGASNVSKLLMEVAENQRADAANSLVYEANLRLRDPVYGCMGVISTLQQQIQSLQAELSAVR 215
                  7**********************************************************************************************999 PP

       DUF260  99 ee 100
                  +e
  Ro03_G10631 216 SE 217
                  87 PP

Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
METSLHEFVL LPSSSYRPQP IAIARRYEDS KSDLSQHYSC ALQYSKNSSC EAQPHAPTIK  60
LYTTREIIRL DEIIGKQIIR RESDIQITSA ADQMVMMSLQ NNSFGQLPGM TTLNTITPCA  120
ACKLLRRRCA EECPFSPYFS PHEPHKFSAV HKVFGASNVS KLLMEVAENQ RADAANSLVY  180
EANLRLRDPV YGCMGVISTL QQQIQSLQAE LSAVRSEILR YKYKEATSQI VSSRDHIHPH  240
HHAAAALVSS GMVSIAAPPQ AISTSPPAAA PSSVVFSSSS STSASSLYTP STNTTGYSSL  300
TSDNIPKAGV HVSLACGFEQ HATL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.13e-65LBD family protein