PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10607

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 1436aa MW: 157626 Da PI: 7.6927

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10607	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.4	1.3e-18	805	905	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ l+++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++++ + +lv+ Ro03_G10607 805 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPLRIQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMRLQAGDTVTFSRID-PGNKLVI 900 99************************555556677***********99899999999.*******************887.7777899 PP EEE-S CS B3 95 kvfrk 99 +++++ Ro03_G10607 901 GFRKA 905 88875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1436 aa Download sequence
METIGGFTKS TQEFFDKLIH RRAKSSPSRN PIEILKRLQR ETFSDLMRLR DRQDKVERMV 60 SLFGPSKGSP FQGANTLLRG EVDFLGGFLW NHHNDDEAHQ SSDALSRAGI RTGIDSRFSF 120 ETAVRENDAL VTEFVASPKH RNDVSECPVS LAKVSYMANV NNWLSAIAIP MGAQCRDVAV 180 LTSPSHQGKG LTDRSSFGPP LLNQHNGSSI GIMVKNANVV VASLAQSVSG LGMKVGSGRV 240 GHCLSTFGQI VCQLPGNTKL SLLGLHRMPK ISSERGAHRR ALAIPLGSLE HHTNRSPETM 300 AGASASPLGT NSQGSASATG SIALMLESEL DETTKIGGWI EMKKSNPRHL EWAVTVSDDS 360 EDSVGWGIGL NGMLGGPNSC DHFQIESYLK LNLSERFSVK PGIAHIMDGN AKRTALMLRH 420 DRSRKVTCNP VAFEIWVLQI GKTEGVEFGA MASKICMNVS CGTSNTHEWK NGWSLRSGGF 480 AHLCYKCGAA YEKLVFCDTF HLGETGWRDC SSCHKPLHCG CVASRSLYEC LDYGGVGCVG 540 CANSSQPRVS NDVLNGFGGL TLSNVGDQTS TSVEYRAVGD TVDEGKFLQL CGTVDEGKLL 600 QLCKIMEANE SNLLPQSPRG DESAFLESNL LPRPQRDDKN ESFGQTKGQE VIHHQIGDVS 660 PGFFSATQSS IGLLTYSQPD NGRTMLEVNH MSKPSSQPSL SMSLGAPSAT PNFTQPFSGA 720 HVDRREQSKT PSSFQQVQKP RPILPRPLKP ALPMSSETNK GARVARPPAE GRGKNQLLPR 780 YWPRITDQEL QKLSGALNST IVPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPISQSEGL 840 PLRIQDVKGN EWTFQFRFWP NNNSRMYVLE GVTPCIQSMR LQAGDTVTFS RIDPGNKLVI 900 GFRKASQSVN MQGPQTSILP NGTSGETSFS SAVDNLAIGS GDSSLFHMNK GSKDPHLNSS 960 EHHLAEWDMY MHNSENNGHR TREDLLQPVS NSEKKRTRNI GPKSKRLLMH SEDVLELRLT 1020 WEEAQDLLRP PPSVKPSIVT IEDHEFEEYD EPPVFGKRSI FTAGPSKRQE QWAQCDDCSK 1080 WRKLPVDVLL PPKWTCSENS WDSSRCSCSA PEEISPKQLD NLLSSFVSLK VHLADAIHAS 1140 VLFGYIRQSL KKRRKIIEKK EAEEHEPSGL DALASAAILG DNVCNSGEQP VGATTKHPRH 1200 RPGCSCIVCI QPPSGKGKHK STCICNVCMT VKRRFKTMMQ RKNQKRQSER EAENSQREND 1260 NRKDESERNG TTSGDAALHM NHSSENSLRD NSNRKDESEM NGTTSGDAAL HMNHSSENGA 1320 SSSQSRTQAD ATESSSARQI DLNCEPFSLF RKPTLPDLLR LAKATSAARP LENYTNENCL 1380 RNMMCEDQAG LASCSLSSTQ ANGDNERRLP NEACLSSVAW DCTSIGDKVY REPDLD

Sequence ? help Back to Top

Protein Sequence Length: 1436 aa Download sequence

METIGGFTKS TQEFFDKLIH RRAKSSPSRN PIEILKRLQR ETFSDLMRLR DRQDKVERMV  60
SLFGPSKGSP FQGANTLLRG EVDFLGGFLW NHHNDDEAHQ SSDALSRAGI RTGIDSRFSF  120
ETAVRENDAL VTEFVASPKH RNDVSECPVS LAKVSYMANV NNWLSAIAIP MGAQCRDVAV  180
LTSPSHQGKG LTDRSSFGPP LLNQHNGSSI GIMVKNANVV VASLAQSVSG LGMKVGSGRV  240
GHCLSTFGQI VCQLPGNTKL SLLGLHRMPK ISSERGAHRR ALAIPLGSLE HHTNRSPETM  300
AGASASPLGT NSQGSASATG SIALMLESEL DETTKIGGWI EMKKSNPRHL EWAVTVSDDS  360
EDSVGWGIGL NGMLGGPNSC DHFQIESYLK LNLSERFSVK PGIAHIMDGN AKRTALMLRH  420
DRSRKVTCNP VAFEIWVLQI GKTEGVEFGA MASKICMNVS CGTSNTHEWK NGWSLRSGGF  480
AHLCYKCGAA YEKLVFCDTF HLGETGWRDC SSCHKPLHCG CVASRSLYEC LDYGGVGCVG  540
CANSSQPRVS NDVLNGFGGL TLSNVGDQTS TSVEYRAVGD TVDEGKFLQL CGTVDEGKLL  600
QLCKIMEANE SNLLPQSPRG DESAFLESNL LPRPQRDDKN ESFGQTKGQE VIHHQIGDVS  660
PGFFSATQSS IGLLTYSQPD NGRTMLEVNH MSKPSSQPSL SMSLGAPSAT PNFTQPFSGA  720
HVDRREQSKT PSSFQQVQKP RPILPRPLKP ALPMSSETNK GARVARPPAE GRGKNQLLPR  780
YWPRITDQEL QKLSGALNST IVPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPISQSEGL  840
PLRIQDVKGN EWTFQFRFWP NNNSRMYVLE GVTPCIQSMR LQAGDTVTFS RIDPGNKLVI  900
GFRKASQSVN MQGPQTSILP NGTSGETSFS SAVDNLAIGS GDSSLFHMNK GSKDPHLNSS  960
EHHLAEWDMY MHNSENNGHR TREDLLQPVS NSEKKRTRNI GPKSKRLLMH SEDVLELRLT  1020
WEEAQDLLRP PPSVKPSIVT IEDHEFEEYD EPPVFGKRSI FTAGPSKRQE QWAQCDDCSK  1080
WRKLPVDVLL PPKWTCSENS WDSSRCSCSA PEEISPKQLD NLLSSFVSLK VHLADAIHAS  1140
VLFGYIRQSL KKRRKIIEKK EAEEHEPSGL DALASAAILG DNVCNSGEQP VGATTKHPRH  1200
RPGCSCIVCI QPPSGKGKHK STCICNVCMT VKRRFKTMMQ RKNQKRQSER EAENSQREND  1260
NRKDESERNG TTSGDAALHM NHSSENSLRD NSNRKDESEM NGTTSGDAAL HMNHSSENGA  1320
SSSQSRTQAD ATESSSARQI DLNCEPFSLF RKPTLPDLLR LAKATSAARP LENYTNENCL  1380
RNMMCEDQAG LASCSLSSTQ ANGDNERRLP NEACLSSVAW DCTSIGDKVY REPDLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1151	1155	KKRRK
2	1232	1246	KRRFKTMMQRKNQKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	B3 family protein