PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10561

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 535aa MW: 59762.3 Da PI: 6.4718

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10561	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.6	6e-20	61	116	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Ro03_G10561 61 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 116 789999***********************************************998 PP
2	START	42.5	1.7e-14	253	333	1	68
HHHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCC CS START 1 elaeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveelldd 68 ela +a++el+++a+a++p+Wv+ +++n++e+l++f+++ + ++ea+r+s++v+m++++lve+l+d+ Ro03_G10561 253 ELAVAAMEELIRMAQAGDPLWVSAHdnsssthhDILNEEEYLRTFPRGIGpkplgLKSEASRESALVIMNHVNLVEILMDV 333 57899****************999999**************999***************************96 PP
3	START	42.1	2.3e-14	334	376	164	206
EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 v+wvehv+ ++r +h+++r+lv+ gla+gak+wvatl+rqce+ Ro03_G10561 334 VIWVEHVEIDDRAVHNIYRPLVNAGLAFGAKRWVATLDRQCER 376 89***************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MFQPSMFDTH HMSMLDMSTH KSSESDMGRS RDDDFETKSG TETTDAPSGD ELDPSQPRPK 60 RKRYHRHTQR QIQEMEAFFK ECPHPDDKQR KELSRELGLE PLQVKFWFQN KRTQMKAQHE 120 RHENSILKNE NDKLRAENNR YKEALGNATC PNCGGPAALG EMSFDEQHLR IENARLREEI 180 DRISSIAAKY VGKPMSSSFS HLSSSHGPSR SLDLAVGSFG APQSGYVGEM YGSGDLLRSV 240 SVPTEADKPL IVELAVAAME ELIRMAQAGD PLWVSAHDNS SSTHHDILNE EEYLRTFPRG 300 IGPKPLGLKS EASRESALVI MNHVNLVEIL MDVVIWVEHV EIDDRAVHNI YRPLVNAGLA 360 FGAKRWVATL DRQCERLASS MANNIPAGDL CVITSAEGRK SMLKLAQRMV LSFCTGVGAS 420 TAHAWTTLSA TGSDDVRVMT RKSMDDPGRP PGIVLSAATS FWLPVPPKRV FDFLRDENSR 480 SEWDILSNGG LVQEMAHIAN GRDPGNCVSL LRVNWERVEG KQNGVVEFSE KLRTN

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MFQPSMFDTH HMSMLDMSTH KSSESDMGRS RDDDFETKSG TETTDAPSGD ELDPSQPRPK  60
RKRYHRHTQR QIQEMEAFFK ECPHPDDKQR KELSRELGLE PLQVKFWFQN KRTQMKAQHE  120
RHENSILKNE NDKLRAENNR YKEALGNATC PNCGGPAALG EMSFDEQHLR IENARLREEI  180
DRISSIAAKY VGKPMSSSFS HLSSSHGPSR SLDLAVGSFG APQSGYVGEM YGSGDLLRSV  240
SVPTEADKPL IVELAVAAME ELIRMAQAGD PLWVSAHDNS SSTHHDILNE EEYLRTFPRG  300
IGPKPLGLKS EASRESALVI MNHVNLVEIL MDVVIWVEHV EIDDRAVHNI YRPLVNAGLA  360
FGAKRWVATL DRQCERLASS MANNIPAGDL CVITSAEGRK SMLKLAQRMV LSFCTGVGAS  420
TAHAWTTLSA TGSDDVRVMT RKSMDDPGRP PGIVLSAATS FWLPVPPKRV FDFLRDENSR  480
SEWDILSNGG LVQEMAHIAN GRDPGNCVSL LRVNWERVEG KQNGVVEFSE KLRTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	1e-175	HD-ZIP family protein