PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10508

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 485aa MW: 52009 Da PI: 5.2094

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10508	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.4e-05	363	400	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Ro03_G10508 363 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 400 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MAEEYQGGIC GGNWWSSASR HALVAASPCS VGFNDHMGSF GCPNDMVDMI KSRSSCGGEI 60 NINSSSDQDH VQNPHENSDI SASTDSNLQM IGFGLNSSSS TLPSDLNQAL LLRSSSGRAE 120 SNFHNAMLQD DMGSFKQPMN NQDFSLDQSS SSSGFPITSS SANNSYGGGF PSQLLQSLYD 180 SEEVVVPQPQ LQSLFNNNGS SSMSYSSAEN YGTISSNDLL SSPASSTTCW PRYSPSCLRP 240 SLQPRQQQQQ QQSGGGGGGL HFSNINTPFW NAPAAALSHD IRSTGLFSSL SQSQYTAPTA 300 AIYDEHKPIN SNNFTKSNTN EDVQDSSSST VKKSGSSFCS STEPVFKRAR IETPSPLPTF 360 KVRKEKLGDR ITALQQLVSP FGKTDTASVL HEAIEYIKFL HDQVSVLSTP YMKNGAPMQH 420 QQGCEKMEVE QGGKQDLKSR GLCLVPISST FPVANETTAD FWTPTFGATS FSGKSEGGPS 480 CSSSF

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MAEEYQGGIC GGNWWSSASR HALVAASPCS VGFNDHMGSF GCPNDMVDMI KSRSSCGGEI  60
NINSSSDQDH VQNPHENSDI SASTDSNLQM IGFGLNSSSS TLPSDLNQAL LLRSSSGRAE  120
SNFHNAMLQD DMGSFKQPMN NQDFSLDQSS SSSGFPITSS SANNSYGGGF PSQLLQSLYD  180
SEEVVVPQPQ LQSLFNNNGS SSMSYSSAEN YGTISSNDLL SSPASSTTCW PRYSPSCLRP  240
SLQPRQQQQQ QQSGGGGGGL HFSNINTPFW NAPAAALSHD IRSTGLFSSL SQSQYTAPTA  300
AIYDEHKPIN SNNFTKSNTN EDVQDSSSST VKKSGSSFCS STEPVFKRAR IETPSPLPTF  360
KVRKEKLGDR ITALQQLVSP FGKTDTASVL HEAIEYIKFL HDQVSVLSTP YMKNGAPMQH  420
QQGCEKMEVE QGGKQDLKSR GLCLVPISST FPVANETTAD FWTPTFGATS FSGKSEGGPS  480
CSSSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	4e-55	bHLH family protein