PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G10184
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 577aa    MW: 64735.5 Da    PI: 5.9136
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G10184genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS402.35e-1231725412374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +++L++cA+a+s++d+    + ++ l +++s +g+pmqRl ay++e+L+arl rs+s +yk+l+++  +   s+e +++++++++++P+ kf++l  N
  Ro03_G10184 172 KDVLIRCAHAISEEDMYTSANWMEVLGHMVSVSGEPMQRLGAYMLEGLRARLERSGSMIYKTLKCEVPT---SEELMTYMSILFKICPYWKFAYLSSN 266
                  789****************************************************************99...8999999999**************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                    I ea+++e rvHiiDf+i qG+QW++L+q La++p+gpp +RiTgv++++s+  +   le +g+rLa++A++ +vpfefn+ +  +  ++el +Lr
  Ro03_G10184 267 VVIREALKNEPRVHIIDFQIAQGTQWVSLIQDLACQPGGPPFIRITGVDDSQSNhaRGGGLEIVGKRLAEVAASYNVPFEFNA-AGMSGCEVELGNLR 363
                  **************************************************9988889999***********************.889999******** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  v++g+a+aV + + lh+++desvs+e++rd++L+lv+slsPkv+++veqe+++n++sF+ rf+e+++yy+a+f+s++a+ +r++++ri+ E ++++r+
  Ro03_G10184 364 VQHGDAIAVTFPYVLHHMPDESVSTENHRDRLLRLVRSLSPKVMTLVEQESNTNTSSFFSRFVESVDYYTAMFESIDAGCARDDKQRISAEMHCVARD 461
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ivn++ace+ er+erhe l+kWr+rl++ GF+p  ++ +   ++k ll+ ++++ yrvee +g+l+lgWk+r+Lv+ SaWr
  Ro03_G10184 462 IVNMIACEEGERVERHELLGKWRSRLMMDGFTPCWFGPSGIGEIKKLLKDYNEN-YRVEEIDGALYLGWKNRALVTSSAWR 541
                  ****************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    
MQTSQQHRST AIHMLHHQPV QEIDPYCLAH FQILENSVCP DTGSQGKNVS FQTYKEEYFT  60
LESCPATDGS IACDSPSAVS GLSNRSPFSP QGSHSCSSDH HHFSDTTSGS PVSGCSGVDD  120
GNELKYKLRA LEVSLLGPES DIVDSRYCSY KSDMMRWNEK EIAEMIPKLN LKDVLIRCAH  180
AISEEDMYTS ANWMEVLGHM VSVSGEPMQR LGAYMLEGLR ARLERSGSMI YKTLKCEVPT  240
SEELMTYMSI LFKICPYWKF AYLSSNVVIR EALKNEPRVH IIDFQIAQGT QWVSLIQDLA  300
CQPGGPPFIR ITGVDDSQSN HARGGGLEIV GKRLAEVAAS YNVPFEFNAA GMSGCEVELG  360
NLRVQHGDAI AVTFPYVLHH MPDESVSTEN HRDRLLRLVR SLSPKVMTLV EQESNTNTSS  420
FFSRFVESVD YYTAMFESID AGCARDDKQR ISAEMHCVAR DIVNMIACEE GERVERHELL  480
GKWRSRLMMD GFTPCWFGPS GIGEIKKLLK DYNENYRVEE IDGALYLGWK NRALVTSSAW  540
RRKPESRNFG CKCTLGKKDN SSPLPLVVLL LETLYCL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein