PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10163

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 410aa MW: 45921.8 Da PI: 7.826

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10163	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76	5.9e-24	246	332	1	86
trihelix 1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW + ev+aLi++r ++e+++r +++ + Wee++ m gf r+ k+Ckekwen+nk++k+ +++kkr s + +tc+yf++le Ro03_G10163 246 RWLQAEVRALIALRASLEHKFRipANSGHGSVWEEIALGMNGMGFDRTGKKCKEKWENINKYFKRAITSDKKR-SANAKTCQYFNDLE 332 8*******************5557899***************************************8.67778*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MEVLTGDRKI PNPDEEEEEE EFPRHSETAD ITLQVLLANP TAAMLQSTTP QKLRIRCNGR 60 SPSVGAAATL ADPGQLGSGT AGDNGLSPDN DDEHFKAQGV EFIKWKRKRK RTSSSSTRRR 120 SKRFERLQLF LESLVNKMME KQEQMHKELI EMVQEREKER IAKEEAWKQH ELERITRDEE 180 IRAQETSRSL ALINFVQNLL GTQVQVPPLA PLVAQPVATL PPPTSNHDLH KDAGIVKCDS 240 TPTDKRWLQA EVRALIALRA SLEHKFRIPA NSGHGSVWEE IALGMNGMGF DRTGKKCKEK 300 WENINKYFKR AITSDKKRSA NAKTCQYFND LELLYNSGLL NLGNAFSQTS NLGNGFSCTS 360 NQNETKSESE SQHCVLSKVD TSLLTCATIP SVLNSNEAAE RTRVVVSPAL

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MEVLTGDRKI PNPDEEEEEE EFPRHSETAD ITLQVLLANP TAAMLQSTTP QKLRIRCNGR  60
SPSVGAAATL ADPGQLGSGT AGDNGLSPDN DDEHFKAQGV EFIKWKRKRK RTSSSSTRRR  120
SKRFERLQLF LESLVNKMME KQEQMHKELI EMVQEREKER IAKEEAWKQH ELERITRDEE  180
IRAQETSRSL ALINFVQNLL GTQVQVPPLA PLVAQPVATL PPPTSNHDLH KDAGIVKCDS  240
TPTDKRWLQA EVRALIALRA SLEHKFRIPA NSGHGSVWEE IALGMNGMGF DRTGKKCKEK  300
WENINKYFKR AITSDKKRSA NAKTCQYFND LELLYNSGLL NLGNAFSQTS NLGNGFSCTS  360
NQNETKSESE SQHCVLSKVD TSLLTCATIP SVLNSNEAAE RTRVVVSPAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	2e-33	Trihelix family protein