PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10062

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HB-other

Protein Properties

Length: 380aa MW: 41711.1 Da PI: 8.2297

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10062	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.7	6.9e-07	13	74	6	55
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +f+++++ e+e+ ++ n p +e LA+k +++ +qV +WFqNrR+ Ro03_G10062 13 RFNQTEVAEMEAILHQhnNTMPARELLVALAEKFsetaerkgkfQVQMKQVWNWFQNRRYAI 74 6899999999999886568899999**********************************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MGRPPSNGGP SFRFNQTEVA EMEAILHQHN NTMPARELLV ALAEKFSETA ERKGKFQVQM 60 KQVWNWFQNR RYAIRAKSSK VLGKLNVSPM PRVESTPVRN VPQGPQPLAA PIHAPSVPSS 120 ARGASENPIL EFEAKSGRDA AWYDVANFLS HRHLETGDPE VLIRFAGFGP EEDEWVNVRK 180 HVRQRSLPCE SSECVAVLPG DLILCFQEGK EQALYFDANV LDAQRRRHDV RGCRCRFLVR 240 YVHDQSEEIV PLRKVCRRPE TDYRLQQLHA VNDTTAAEQK SMDQFKVPVT SAEMIQKQQN 300 ADAAFAAPVF HANASLATQA STPELKKPEM STVISAGNTS VPPGSAGVTS GSATGCAVLT 360 SCTATVISHG SSVGNMPGGN

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MGRPPSNGGP SFRFNQTEVA EMEAILHQHN NTMPARELLV ALAEKFSETA ERKGKFQVQM  60
KQVWNWFQNR RYAIRAKSSK VLGKLNVSPM PRVESTPVRN VPQGPQPLAA PIHAPSVPSS  120
ARGASENPIL EFEAKSGRDA AWYDVANFLS HRHLETGDPE VLIRFAGFGP EEDEWVNVRK  180
HVRQRSLPCE SSECVAVLPG DLILCFQEGK EQALYFDANV LDAQRRRHDV RGCRCRFLVR  240
YVHDQSEEIV PLRKVCRRPE TDYRLQQLHA VNDTTAAEQK SMDQFKVPVT SAEMIQKQQN  300
ADAAFAAPVF HANASLATQA STPELKKPEM STVISAGNTS VPPGSAGVTS GSATGCAVLT  360
SCTATVISHG SSVGNMPGGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.3	1e-132	HB-other family protein