PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G08710

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

STAT

Protein Properties

Length: 661aa MW: 74748.7 Da PI: 6.4744

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G08710	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	182.8	4.6e-57	218	337	1	120
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfl 98 ldvvll+a++++v+k++ev+asL y d+g++vek++d eapLL++ dG+ef+s +rp+k+++G+asfklkisqLsskcdnrLfri+f+ipk +kypf+ Ro03_G08710 218 LDVVLLDAFSHTVNKELEVIASLAYDDNGAHVEKTSDGEAPLLATHDGIEFASCNRPSKVVQGHASFKLKISQLSSKCDNRLFRIMFQIPKWEKYPFF 315 8*********************************************************************************************** PP STAT 99 eavskpirCisrsrntrssslt 120 ++++ pirCisrsrntr sslt Ro03_G08710 316 NTFTPPIRCISRSRNTRVSSLT 337 ***************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MAKESDEYLP LNDFRVEIDG KEATFSVCFW LYLFSSTTFP ATLIQVHSGA TGSSPFLVIN 60 ENKKMRLLPM RVLQKETRDQ CDSTSLSEAP HIDMWSEFPM KKWVHVGWEV SSDFVRLHID 120 GEIVGKKAIS SLFNKDSISN GLSKIALVFS GGDDNNLQGY VHNHNILPLT SSIMEYFAKD 180 PPLQLSIDNS SVSEIEEVSD GIWSIVGGKA SCRRIFSLDV VLLDAFSHTV NKELEVIASL 240 AYDDNGAHVE KTSDGEAPLL ATHDGIEFAS CNRPSKVVQG HASFKLKISQ LSSKCDNRLF 300 RIMFQIPKWE KYPFFNTFTP PIRCISRSRN TRVSSLTLGR SPFAPLDVYQ PSGMDDKISE 360 LQHISAPEEK LNPSPKRFKL GEDRVSSDFS GLGQPENKYN SHSRTANQEI ATSASNEELQ 420 DFSHQVSLYS GCSHHRHQII MSKRLVEEGT KAWKLISQNN HQVQWESVVF EIEEQFMKIA 480 CCSSRSLTQQ DFELLKRIAG CQVYLAQENF EKMWCWLYPV AYTLSKDWIN TMWSSTSPKW 540 IEGFITKEEA ESSLQASRGF QKPGTFVLRF PTSRSWPHPD AGSLVVTYLG SKCTIHHKLI 600 SLDHIFSSEE KNAKPLQDML LAEPELSQLG RQEILTFDNK KSLSSPEIHS TIPFLGHVFY 660 V

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MAKESDEYLP LNDFRVEIDG KEATFSVCFW LYLFSSTTFP ATLIQVHSGA TGSSPFLVIN  60
ENKKMRLLPM RVLQKETRDQ CDSTSLSEAP HIDMWSEFPM KKWVHVGWEV SSDFVRLHID  120
GEIVGKKAIS SLFNKDSISN GLSKIALVFS GGDDNNLQGY VHNHNILPLT SSIMEYFAKD  180
PPLQLSIDNS SVSEIEEVSD GIWSIVGGKA SCRRIFSLDV VLLDAFSHTV NKELEVIASL  240
AYDDNGAHVE KTSDGEAPLL ATHDGIEFAS CNRPSKVVQG HASFKLKISQ LSSKCDNRLF  300
RIMFQIPKWE KYPFFNTFTP PIRCISRSRN TRVSSLTLGR SPFAPLDVYQ PSGMDDKISE  360
LQHISAPEEK LNPSPKRFKL GEDRVSSDFS GLGQPENKYN SHSRTANQEI ATSASNEELQ  420
DFSHQVSLYS GCSHHRHQII MSKRLVEEGT KAWKLISQNN HQVQWESVVF EIEEQFMKIA  480
CCSSRSLTQQ DFELLKRIAG CQVYLAQENF EKMWCWLYPV AYTLSKDWIN TMWSSTSPKW  540
IEGFITKEEA ESSLQASRGF QKPGTFVLRF PTSRSWPHPD AGSLVVTYLG SKCTIHHKLI  600
SLDHIFSSEE KNAKPLQDML LAEPELSQLG RQEILTFDNK KSLSSPEIHS TIPFLGHVFY  660
V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17040.1	0.0	STAT family protein