PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G08145
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 275aa    MW: 29265.4 Da    PI: 9.207
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G08145genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.2e-0985110227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt+lC+ +     Ck+Gd+C+FaHg+
  Ro03_G08145  85 KTRLCNKYNTAEGCKFGDKCHFAHGE 110
                  8***********************96 PP
2zf-CCCH33.95.2e-11242266126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC +f + G+C +GdrC+FaHg
  Ro03_G08145 242 FKTKLCENFTK-GQCTFGDRCHFAHG 266
                  69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MKLDPLMAMA ASRNPSQAGC LKLRVRFLIT SGCPFGEGCH FLHYVPGGIK AVSHMIGSNP  60
THPPPPRNSA VPPSFPDGSS PPAVKTRLCN KYNTAEGCKF GDKCHFAHGE YELGRPTAQS  120
YDDPRGRMGG RNEPPPPTHG AAGRFGAIAN AKISVDASLA GAIIGKNGLN SKQICRVTGA  180
KLSIREHESD PKLRNIELEG TFDQIKDASA MVQEIIVNVS SAAGPHMRNP AMGASALGSS  240
NFKTKLCENF TKGQCTFGDR CHFAHGAEEL RRGGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-59C3H family protein