PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G08083
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 286aa    MW: 31820.2 Da    PI: 8.6985
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G08083genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-183989155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++ GVr+++ +g+WvAeI+d      k+ r +lg+f taeeAa+a+++a+  l+g
  Ro03_G08083 39 CKFVGVRQRP-SGKWVAEIKDtT----KKIRMWLGTFETAEEAARAYDEAACLLRG 89
                 799*******.7*********33....36**********************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MELQSQKQQK GVSANKQSKF KERSGSNNNN SNSNSNTKCK FVGVRQRPSG KWVAEIKDTT  60
KKIRMWLGTF ETAEEAARAY DEAACLLRGS NTRTNFTSTH VPSNSPLSLK IKNLLNHKKS  120
LKQQSPSTSN TINTTPKAST RGTSTITHNN DHSYYDANCS SLPRFKTQNI EVFGDGYRPD  180
LSNCNGDLQV PAMFRLDQSW QLLSGFDQLP HNHQGLDLTK GIDNGVSPNA AEPNQLTEFE  240
HAKGERQITS ASFYAMNGVN EYLENTYDAS DALWDLPTLS QLFCLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-46ERF family protein