PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G07494

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 347aa MW: 39380.2 Da PI: 6.5238

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G07494	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164	5.3e-51	15	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 lppGfrFhP+deel+v+yL+kkv++++l++ + i+e+d+yk++Pw+Lpkk +e+ewyfFs+rd+ky++gkr+nra++sgyWka g+dk++l++ Ro03_G07494 15 LPPGFRFHPSDEELIVHYLQKKVTSQPLPA-HLITEIDLYKYNPWELPKKSLFGEDEWYFFSPRDRKYPNGKRPNRAAASGYWKAAGSDKPILTScgI 111 79**************************.88***********87778999**********************************9766 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g+kk Lvfy+grapkg+k++W+m+eyrl Ro03_G07494 112 SKRIGVKKALVFYTGRAPKGVKSEWIMNEYRL 143 677*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MEIEPTFSVS PNFQLPPGFR FHPSDEELIV HYLQKKVTSQ PLPAHLITEI DLYKYNPWEL 60 PKKSLFGEDE WYFFSPRDRK YPNGKRPNRA AASGYWKAAG SDKPILTSCG ISKRIGVKKA 120 LVFYTGRAPK GVKSEWIMNE YRLLNSTTKP SRSQGSMRLD DWVLCRVQQK GNTSKSTCNS 180 QDSSNPEFWN CLPKVEQTQP AYANPNTDII KDFLYKDCRL LASILAGQAP PISSVSFQGT 240 NDGYEVGTNY KVNSTISISS LDIISDTLQR KSIEEITKEN PFLIDNNLDS KNNDEDVLQS 300 KQLEGNYINC YNPNHSQNDI LKANATDTTN FEELNEMAIL GRYFAEI

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MEIEPTFSVS PNFQLPPGFR FHPSDEELIV HYLQKKVTSQ PLPAHLITEI DLYKYNPWEL  60
PKKSLFGEDE WYFFSPRDRK YPNGKRPNRA AASGYWKAAG SDKPILTSCG ISKRIGVKKA  120
LVFYTGRAPK GVKSEWIMNE YRLLNSTTKP SRSQGSMRLD DWVLCRVQQK GNTSKSTCNS  180
QDSSNPEFWN CLPKVEQTQP AYANPNTDII KDFLYKDCRL LASILAGQAP PISSVSFQGT  240
NDGYEVGTNY KVNSTISISS LDIISDTLQR KSIEEITKEN PFLIDNNLDS KNNDEDVLQS  300
KQLEGNYINC YNPNHSQNDI LKANATDTTN FEELNEMAIL GRYFAEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-77	NAC family protein