PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G07478
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 831aa    MW: 90577.4 Da    PI: 5.2899
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G07478genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.8e-066289127
                 --S---SGGGGTS.--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                 +kt+lC+ff+r    C +G+ C++aH++
  Ro03_G07478 62 WKTSLCSFFRRQDaSCGHGSGCRYAHSE 89
                 8**********66*************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    
MASTEIADPQ SPLNGHDSTD QPQPPQDPET QAPQDDAVSG DKRKREEEGG DAKPAAGQHP  60
LWKTSLCSFF RRQDASCGHG SGCRYAHSEA ELRPRPDNTW DPTSERAKKA AKKSGEDKEC  120
AAWDDVMMTE ALDDDEDGDG DGGDGFGLDP ALSKCLVHLP RSWKSDKLIE FLSEQASASI  180
FVFVFLLGIQ YKSAKKKKGM VLGFMSFESV EQLETAVKAL DGISIGNNNI KVADVLPRSF  240
EKKTKSAMGL PLVGENAEDS MVANGVEDGD GTQGRSARTV VTPLAHMPYA DQLEHKKNSL  300
MKILKRLSKS ARKACPNGIP LPEWILKSRE IGGLPCVLEG ILASPVVNGY RNKCEFSVGQ  360
SLQGKTTVGF MLGNFREGVT AVEEPLDCPN VSPISCKYAS IFQEFLQQSS LPVWNRFKNT  420
GFWRQLTVRE GRSGMVSDAE NCEPNISEVM LMVQVSTAGF DDSLITSEFE RVALAFSAGA  480
TANSPSLPLT ALVIQDHQGI SNAAPADAPL RSLCISKAEN GSEIHATNNV AEPKIHDYIS  540
GLRFCISPTA FFQVNTVAAE KLYSLAGDWA ELGPDTLLFD VCCGTGTIGL TLAHRVGMVV  600
GIEMNASAVL DAQRNAEING IKNCRFICSK AEDVMRSLLE EYRTAPEKQD NDAIEGSDKA  660
IVTDEEKAII KEDEKPNPEE SSSHEPENCK TACEGLENSK QELQKSSTSE NRKSPVQCFK  720
NVVAIVDPPR SGLHPTVIKA LRTHPELRRL VYISCNPESL VANAIELCTP SPDKIEKNKN  780
NRAWRNMSSA GLARHRAKSM PASEPFRPVK AMAVDLFPHT VHCELVMLLE R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein