PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G07478

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 831aa MW: 90577.4 Da PI: 5.2899

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G07478	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.8e-06	62	89	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC+ff+r C +G+ C++aH++ Ro03_G07478 62 WKTSLCSFFRRQDaSCGHGSGCRYAHSE 89 8********66***********95 PP

Sequence ? help Back to Top
Protein Sequence Length: 831 aa Download sequence
MASTEIADPQ SPLNGHDSTD QPQPPQDPET QAPQDDAVSG DKRKREEEGG DAKPAAGQHP 60 LWKTSLCSFF RRQDASCGHG SGCRYAHSEA ELRPRPDNTW DPTSERAKKA AKKSGEDKEC 120 AAWDDVMMTE ALDDDEDGDG DGGDGFGLDP ALSKCLVHLP RSWKSDKLIE FLSEQASASI 180 FVFVFLLGIQ YKSAKKKKGM VLGFMSFESV EQLETAVKAL DGISIGNNNI KVADVLPRSF 240 EKKTKSAMGL PLVGENAEDS MVANGVEDGD GTQGRSARTV VTPLAHMPYA DQLEHKKNSL 300 MKILKRLSKS ARKACPNGIP LPEWILKSRE IGGLPCVLEG ILASPVVNGY RNKCEFSVGQ 360 SLQGKTTVGF MLGNFREGVT AVEEPLDCPN VSPISCKYAS IFQEFLQQSS LPVWNRFKNT 420 GFWRQLTVRE GRSGMVSDAE NCEPNISEVM LMVQVSTAGF DDSLITSEFE RVALAFSAGA 480 TANSPSLPLT ALVIQDHQGI SNAAPADAPL RSLCISKAEN GSEIHATNNV AEPKIHDYIS 540 GLRFCISPTA FFQVNTVAAE KLYSLAGDWA ELGPDTLLFD VCCGTGTIGL TLAHRVGMVV 600 GIEMNASAVL DAQRNAEING IKNCRFICSK AEDVMRSLLE EYRTAPEKQD NDAIEGSDKA 660 IVTDEEKAII KEDEKPNPEE SSSHEPENCK TACEGLENSK QELQKSSTSE NRKSPVQCFK 720 NVVAIVDPPR SGLHPTVIKA LRTHPELRRL VYISCNPESL VANAIELCTP SPDKIEKNKN 780 NRAWRNMSSA GLARHRAKSM PASEPFRPVK AMAVDLFPHT VHCELVMLLE R

Sequence ? help Back to Top

Protein Sequence Length: 831 aa Download sequence

MASTEIADPQ SPLNGHDSTD QPQPPQDPET QAPQDDAVSG DKRKREEEGG DAKPAAGQHP  60
LWKTSLCSFF RRQDASCGHG SGCRYAHSEA ELRPRPDNTW DPTSERAKKA AKKSGEDKEC  120
AAWDDVMMTE ALDDDEDGDG DGGDGFGLDP ALSKCLVHLP RSWKSDKLIE FLSEQASASI  180
FVFVFLLGIQ YKSAKKKKGM VLGFMSFESV EQLETAVKAL DGISIGNNNI KVADVLPRSF  240
EKKTKSAMGL PLVGENAEDS MVANGVEDGD GTQGRSARTV VTPLAHMPYA DQLEHKKNSL  300
MKILKRLSKS ARKACPNGIP LPEWILKSRE IGGLPCVLEG ILASPVVNGY RNKCEFSVGQ  360
SLQGKTTVGF MLGNFREGVT AVEEPLDCPN VSPISCKYAS IFQEFLQQSS LPVWNRFKNT  420
GFWRQLTVRE GRSGMVSDAE NCEPNISEVM LMVQVSTAGF DDSLITSEFE RVALAFSAGA  480
TANSPSLPLT ALVIQDHQGI SNAAPADAPL RSLCISKAEN GSEIHATNNV AEPKIHDYIS  540
GLRFCISPTA FFQVNTVAAE KLYSLAGDWA ELGPDTLLFD VCCGTGTIGL TLAHRVGMVV  600
GIEMNASAVL DAQRNAEING IKNCRFICSK AEDVMRSLLE EYRTAPEKQD NDAIEGSDKA  660
IVTDEEKAII KEDEKPNPEE SSSHEPENCK TACEGLENSK QELQKSSTSE NRKSPVQCFK  720
NVVAIVDPPR SGLHPTVIKA LRTHPELRRL VYISCNPESL VANAIELCTP SPDKIEKNKN  780
NRAWRNMSSA GLARHRAKSM PASEPFRPVK AMAVDLFPHT VHCELVMLLE R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	0.0	C3H family protein