PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G06977

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 344aa MW: 38778.5 Da PI: 7.5187

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G06977	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.9	3.3e-52	11	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhP+deelv++yL kkv++++ +l + evd++k+ePwd+p+++ ++kewyf+s+rd+kyatg r+nrat++gyWkatgkd+++++k+++ Ro03_G06977 11 LPPGFRFHPRDEELVCDYLMKKVTHSDSTL---MIEVDLNKCEPWDIPESACVGRKEWYFYSQRDRKYATGLRTNRATATGYWKATGKDRPIFRKGTT 105 79*********************99666...889********77677899************************************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg++ktLvfy+grapkg+k+dWvmhe+rle Ro03_G06977 106 LVGMRKTLVFYQGRAPKGRKSDWVMHEFRLE 136 **************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MSNISMVEAK LPPGFRFHPR DEELVCDYLM KKVTHSDSTL MIEVDLNKCE PWDIPESACV 60 GRKEWYFYSQ RDRKYATGLR TNRATATGYW KATGKDRPIF RKGTTLVGMR KTLVFYQGRA 120 PKGRKSDWVM HEFRLEGPFG PPKISSLKED WVLCRVFYKN RELIPAKPSM GSSVSCYDDD 180 TGSSSHQLPA LMDSYISFDG QTHQQQHHHD NEYHQQVPCF SIDTLFSQNQ MTTDPIFTTH 240 NNNIMEQNVP SSTGCGQLPT AATTFLDTAN FSCDNRKVLK AVLSQLTKME SSCYPNTPSS 300 TLKDSSPPSF GGGEAAGSSS DNNYLSDHQV DYAFAPQRLK ATLN

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MSNISMVEAK LPPGFRFHPR DEELVCDYLM KKVTHSDSTL MIEVDLNKCE PWDIPESACV  60
GRKEWYFYSQ RDRKYATGLR TNRATATGYW KATGKDRPIF RKGTTLVGMR KTLVFYQGRA  120
PKGRKSDWVM HEFRLEGPFG PPKISSLKED WVLCRVFYKN RELIPAKPSM GSSVSCYDDD  180
TGSSSHQLPA LMDSYISFDG QTHQQQHHHD NEYHQQVPCF SIDTLFSQNQ MTTDPIFTTH  240
NNNIMEQNVP SSTGCGQLPT AATTFLDTAN FSCDNRKVLK AVLSQLTKME SSCYPNTPSS  300
TLKDSSPPSF GGGEAAGSSS DNNYLSDHQV DYAFAPQRLK ATLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	1e-109	NAC family protein