PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G06938

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 387aa MW: 44402.8 Da PI: 8.1276

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G06938	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.1	4.4e-50	25	149	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 pGfrFhPtdeelv +yL++k+e+k++ l e ik++diyk++PwdL+ ++ +a++kewyfF++r +ky+++ r+nr+t sg+Wkatg dk++++++ + Ro03_G06938 25 PGFRFHPTDEELVGFYLRRKIEKKPICL-ELIKSIDIYKHDPWDLQkSTSTAGDKEWYFFCRRGRKYKNSIRPNRVTGSGFWKATGIDKPIHDSHINC 121 9**********************999.89**********9446667999**********************************99999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyr 127 +glkktLv+y+g+a kg+ktdW+mhe+r Ro03_G06938 122 IGLKKTLVYYRGSAGKGTKTDWMMHEFR 149 *************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MDGKITTSKD DHHDHDLDGE DVPLPGFRFH PTDEELVGFY LRRKIEKKPI CLELIKSIDI 60 YKHDPWDLQK STSTAGDKEW YFFCRRGRKY KNSIRPNRVT GSGFWKATGI DKPIHDSHIN 120 CIGLKKTLVY YRGSAGKGTK TDWMMHEFRR PSTNDNNNVH SNRSSCTVIA QSTNITDPQE 180 AEIWTLCRIF KRNMSHKKYI PDWRQLSTNQ SSSKKCSATT DQDHRHLDSL TNNREAYIDF 240 GASTICFEEK KPNVLNHTNY NTGSNNNQAS QNVGQFSSGL ATATHPCNTD LFTSSFSYAD 300 IENHDLFNEN WEEIRSVVQL ALDPTNVLFN VIAHEILRAH EKKLRSSGGR LQIKRASEVV 360 FMLLETRNTR LIDELVVLLN CQICSSQ

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MDGKITTSKD DHHDHDLDGE DVPLPGFRFH PTDEELVGFY LRRKIEKKPI CLELIKSIDI  60
YKHDPWDLQK STSTAGDKEW YFFCRRGRKY KNSIRPNRVT GSGFWKATGI DKPIHDSHIN  120
CIGLKKTLVY YRGSAGKGTK TDWMMHEFRR PSTNDNNNVH SNRSSCTVIA QSTNITDPQE  180
AEIWTLCRIF KRNMSHKKYI PDWRQLSTNQ SSSKKCSATT DQDHRHLDSL TNNREAYIDF  240
GASTICFEEK KPNVLNHTNY NTGSNNNQAS QNVGQFSSGL ATATHPCNTD LFTSSFSYAD  300
IENHDLFNEN WEEIRSVVQL ALDPTNVLFN VIAHEILRAH EKKLRSSGGR LQIKRASEVV  360
FMLLETRNTR LIDELVVLLN CQICSSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	1e-82	NAC family protein