PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G06934 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 186aa MW: 20795.6 Da PI: 7.9669 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 146.1 | 1e-45 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la ++ Ro03_G06934 14 PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAIAQ 111 7**********************************************************************************************998 PP DUF260 99 ee 100 +e Ro03_G06934 112 AE 113 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence |
MKEISGRKQG GMSPCAACKL LRRRCAQDCV FAPYFPADEP HKFASVHKVF GASNVNKMLQ 60 ELPEHQRSDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DVLQTQLAIA QAEVVHLKMG 120 QFPSTSSPAT TPETTSPISV KHTMPNNNNN SQQQLQHRHH YHPHHQTTKS FFTMDMVEDL 180 ILLENL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-67 | LBD family protein |