PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G06563

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HB-other

Protein Properties

Length: 1736aa MW: 195803 Da PI: 5.0751

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G06563	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.9e-18	36	91	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps++ r+eL++klgL++rq ++WF+ rR k+kk Ro03_G06563 36 PKRQMKTPFQLETLEKAYAVETYPSESIRAELSEKLGLSDRQLQMWFCHRRLKDKK 91 69****************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1736 aa Download sequence
MEPGGSEGDN QQIRNHENNN NNSNSKLNNS SEGGKPKRQM KTPFQLETLE KAYAVETYPS 60 ESIRAELSEK LGLSDRQLQM WFCHRRLKDK KEGGPVPGPA KKQRKSVAAL PEPPVDELAH 120 GSEPGSDYGS GSGSGSSPFG HAERNVVSRS VVEDLPRRRH YESQQSITEL RAIAIVEAQL 180 GEPLRDDGPV LGIEFDQVPP DAFGAPLVAE QQKRHDAKPN KGTPRPLHEY PYLQDHASIR 240 PDVYGLVTQS HFHDSAIDGP TARTSPFASG NEQLSRVHGV HGRSRLLSQQ ERQAVAFSSP 300 GDDGLPQRDP FINARMNTQY SEPPTIAPEN SNVLSDGQIN DTMLRMERKR KNEEVRMAKE 360 VEAHEVRIRK ELEKQDILRR KNEERIRKDM ERQDRERRKE EERLMRERQR EEERSKKEQK 420 REIERREKFL QKEHIRAEKR RQKEELRKER EEVRRKAALE KATAKRLLNK SMELYEDEQL 480 ELMELAAASK GLSSIISIDP DTNLDAFRDD LTAFPPKSVL LKRPFAVHPW IDSEENIGNF 540 LMVWRFLITF ADVLELWPFT LDEFVQAFHD YDSRLLGEIH VALLRLIIKD IEDVARTPST 600 GLGFNQNGAA NPGGGHPQIV EGAYAWGFDI RNWQQHLNLL TWPEIFRQLA LSAGFGPQLK 660 KRSISWSYLP DNDEGKGCHD VISTLRNGSA AENAFAVMQE KGLLAPRRSR HRLTPGTVKF 720 AAFHVLSLEG NKGLTVLELA DKIQKSGLRD LTTSKTPEAS ISVALTRDTK LFERIAPSTY 780 RVRSAYRKDP IDAEAILSAA RKKVQIFENG ILAAEDVDEV ERDDAEEVER DEDSDCDDVD 840 EDPEVDDLAT PAVAKKSPDQ YNEVTPFSEN GQENLCNDVA LIVQNEFDKD VSSLPISASK 900 EADAPSASSK QCVSGVEIST GNLDQENMEI DESKSGESWV QGLTEGDYSD LSVEERLNSL 960 VSLIGIANEG NSIRVVLEDR LEAANALKKQ MWAEAQLDKS RLKEENVSKL DIPFFTGGKA 1020 EAQVIGVDDG QSPLLDVDNR INEEGAAENQ NSNHGSQVLL NHLNGVSVER SLVSQDISMG 1080 PENILNQQLA YASKKSRSQL KSYIAHRAEE MYAYRSLPLG QDRRHNRYWQ FVASASSNDP 1140 GSGRIFIELN NGNWRLIDTE EAFDTLLMSL DTRGIRESHL RLMLQKIEAS FKENVRRNVH 1200 PSSRSHVKKE ADEMDSSPDY PSRFDSPGST VCALNSDMAE TSSSFRIELN RNETEKRAAL 1260 RRYQDFQKWM WRECFSTSAL CASKYGKKRC RQLFDICDFC LSCYHFEDSH CSFCHQTFGA 1320 TYKNLNFSEH VIQCKEKRNL ETCDIHVPGT SLPLASRLLK AFIALVEVSV PPEALQSFWT 1380 EDCRKTWGEK LNASSSIDEL LQILTLFETA MKRDFMSSNF AATNELLGSR KQSLITNRDY 1440 LDTKSISVLP WIPYTTAAVA LRVYEMDSAI TYIPHEKPEP NGDKEVGEHI KIPLRFTPMR 1500 NDREIEPTET DHNEQSTHLK SARNSFKRGR GGREQGRAKK YKSGGSRRKA RGNENEIMNQ 1560 GLGPVGRRTQ GQGSGRGRRT VRKRRMKNRA VEGTLMGHMT DIRSSPDSGG ESPRNLAGEW 1620 DDENINMIHM KGDEQGERYE QAEALESDDD DQAVGYEQGN WEIGFDGTSS GWNGGLREPS 1680 DEDMDASEDD NNGIEEVREE DSEGDVDMSD GSDEVPNRII NDDGSDSASD DDDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1736 aa Download sequence

MEPGGSEGDN QQIRNHENNN NNSNSKLNNS SEGGKPKRQM KTPFQLETLE KAYAVETYPS  60
ESIRAELSEK LGLSDRQLQM WFCHRRLKDK KEGGPVPGPA KKQRKSVAAL PEPPVDELAH  120
GSEPGSDYGS GSGSGSSPFG HAERNVVSRS VVEDLPRRRH YESQQSITEL RAIAIVEAQL  180
GEPLRDDGPV LGIEFDQVPP DAFGAPLVAE QQKRHDAKPN KGTPRPLHEY PYLQDHASIR  240
PDVYGLVTQS HFHDSAIDGP TARTSPFASG NEQLSRVHGV HGRSRLLSQQ ERQAVAFSSP  300
GDDGLPQRDP FINARMNTQY SEPPTIAPEN SNVLSDGQIN DTMLRMERKR KNEEVRMAKE  360
VEAHEVRIRK ELEKQDILRR KNEERIRKDM ERQDRERRKE EERLMRERQR EEERSKKEQK  420
REIERREKFL QKEHIRAEKR RQKEELRKER EEVRRKAALE KATAKRLLNK SMELYEDEQL  480
ELMELAAASK GLSSIISIDP DTNLDAFRDD LTAFPPKSVL LKRPFAVHPW IDSEENIGNF  540
LMVWRFLITF ADVLELWPFT LDEFVQAFHD YDSRLLGEIH VALLRLIIKD IEDVARTPST  600
GLGFNQNGAA NPGGGHPQIV EGAYAWGFDI RNWQQHLNLL TWPEIFRQLA LSAGFGPQLK  660
KRSISWSYLP DNDEGKGCHD VISTLRNGSA AENAFAVMQE KGLLAPRRSR HRLTPGTVKF  720
AAFHVLSLEG NKGLTVLELA DKIQKSGLRD LTTSKTPEAS ISVALTRDTK LFERIAPSTY  780
RVRSAYRKDP IDAEAILSAA RKKVQIFENG ILAAEDVDEV ERDDAEEVER DEDSDCDDVD  840
EDPEVDDLAT PAVAKKSPDQ YNEVTPFSEN GQENLCNDVA LIVQNEFDKD VSSLPISASK  900
EADAPSASSK QCVSGVEIST GNLDQENMEI DESKSGESWV QGLTEGDYSD LSVEERLNSL  960
VSLIGIANEG NSIRVVLEDR LEAANALKKQ MWAEAQLDKS RLKEENVSKL DIPFFTGGKA  1020
EAQVIGVDDG QSPLLDVDNR INEEGAAENQ NSNHGSQVLL NHLNGVSVER SLVSQDISMG  1080
PENILNQQLA YASKKSRSQL KSYIAHRAEE MYAYRSLPLG QDRRHNRYWQ FVASASSNDP  1140
GSGRIFIELN NGNWRLIDTE EAFDTLLMSL DTRGIRESHL RLMLQKIEAS FKENVRRNVH  1200
PSSRSHVKKE ADEMDSSPDY PSRFDSPGST VCALNSDMAE TSSSFRIELN RNETEKRAAL  1260
RRYQDFQKWM WRECFSTSAL CASKYGKKRC RQLFDICDFC LSCYHFEDSH CSFCHQTFGA  1320
TYKNLNFSEH VIQCKEKRNL ETCDIHVPGT SLPLASRLLK AFIALVEVSV PPEALQSFWT  1380
EDCRKTWGEK LNASSSIDEL LQILTLFETA MKRDFMSSNF AATNELLGSR KQSLITNRDY  1440
LDTKSISVLP WIPYTTAAVA LRVYEMDSAI TYIPHEKPEP NGDKEVGEHI KIPLRFTPMR  1500
NDREIEPTET DHNEQSTHLK SARNSFKRGR GGREQGRAKK YKSGGSRRKA RGNENEIMNQ  1560
GLGPVGRRTQ GQGSGRGRRT VRKRRMKNRA VEGTLMGHMT DIRSSPDSGG ESPRNLAGEW  1620
DDENINMIHM KGDEQGERYE QAEALESDDD DQAVGYEQGN WEIGFDGTSS GWNGGLREPS  1680
DEDMDASEDD NNGIEEVREE DSEGDVDMSD GSDEVPNRII NDDGSDSASD DDDYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	92	RRLKDKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	HB-other family protein