PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G06548 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 22951.1 Da PI: 9.1733 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.2e-20 | 11 | 62 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++ a+++l+g+ Ro03_G06548 11 PHYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGN 62 68********.**********883....5*************************995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MAASSSSTGQ PHYRGVRKRP WGRYAAEIRD PWKKTRVWLG TFDTPEEAAL AYDGAARSLR 60 GNKAKTNFPA PLTRADLSLD LNVSSAHWAS HSGRLVEFLH TGVLNDVVKN EEAVATTSFV 120 VSRGPRPPVV GSSLVQEGSS TASYLGFVRR GLPIDLNEPP PLWLTASFRF SAQFFFYVFL 180 LPCVFGCLKM EKLRSEDICN VEEKMDP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 4e-47 | ERF family protein |