PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G06546
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 969aa    MW: 107538 Da    PI: 6.1532
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G06546genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.3e-08260278625
                  -SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                  C+ffa+ G+C +G +C+F+H
  Ro03_G06546 260 CDFFAK-GWCIRGTSCRFIH 278
                  ******.************* PP

Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    
MPDSSDDQSP DLAQVSDSDI DEDEDPEEDP EEVEDEDAEE VEVDQEEEEE RVEVDMDISN  60
SPIRADHHHK DVRRQDIKFE GFGGNSGPGS STQGKSEARP PSNTLDIEES RVDSNFSGPS  120
NEPLHLKSQK TFAAAEDCRS QEFAKNDARI LSGKRTSTHH TESHANVKAH FRNNEIRDAK  180
VTTSSSVTRE DTARAILMTD NVSKEFKSVI NSEDEMKQVV QPTNDRNQME SRSAASEIGT  240
LIMSPVAETN DPNKRPAIVC DFFAKGWCIR GTSCRFIHTK DSPKNSHPQS EGDVAAASCS  300
REVKVDEGLR DIPERSRLLG FHDSLASSSG NSFPFSSHLG ILRRQQFQSV LHEESNVGDS  360
TDVQKLHLPK DDLVFLTSYK DAGKDVQTRN WPADDYNNSP IKKGRYSIGN PSSRSSSMEA  420
GVWRHVHSDH TSPLVSHSLN SSSSTLIATG LFPSSRISNW TGFSLPASYS NLDANPLVSQ  480
KRLDSNRDYH ASTRSSAFLK SSSPFSSSEL KNFPPTSVSL HSAELKTKIS SNDWEPSVPF  540
RPSFILPSAL LSFSAKQYDP LHSSIELPKL ANNSFEASFY SERAAVGNRL HQKVHVESVS  600
GTLRPACDAD TNSMSSHNTY HEKVLDNSCY TREPNSPVTE AETVGTSVVY QNGTLTKDKN  660
PLGHSQVKGT TNPNKMGIHG DSRHQSDGSS HQRDTNVDKF RENNEVEVDH LTDGDVQQES  720
KEMRQFRAAL IELVKELLKP KWREGSLSKD AHNKIVKKAV DKILSAFQPQ QIPPTIETVM  780
QYLSDCRPKI SKLVEGYIEK YGNIILVGDW KELLAFHTCL SLTPKMVGLT AWLSLQGKKN  840
DLNIFRPNHE LGIACSFFSW LVCSGFGLSD ACVPLSVDLL LLVRVARAEA FLRCCLAAVC  900
CADWNLIGCG TRIAGPEHTG GQQTKRNRLN SYRLQHLLKS CFVDGMPLFS WCTLVPCFQA  960
LYIRSSGMR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-39C3H family protein