PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G06546 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C3H | ||||||||
Protein Properties | Length: 969aa MW: 107538 Da PI: 6.1532 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.3e-08 | 260 | 278 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+ffa+ G+C +G +C+F+H Ro03_G06546 260 CDFFAK-GWCIRGTSCRFIH 278 ******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 969 aa Download sequence |
MPDSSDDQSP DLAQVSDSDI DEDEDPEEDP EEVEDEDAEE VEVDQEEEEE RVEVDMDISN 60 SPIRADHHHK DVRRQDIKFE GFGGNSGPGS STQGKSEARP PSNTLDIEES RVDSNFSGPS 120 NEPLHLKSQK TFAAAEDCRS QEFAKNDARI LSGKRTSTHH TESHANVKAH FRNNEIRDAK 180 VTTSSSVTRE DTARAILMTD NVSKEFKSVI NSEDEMKQVV QPTNDRNQME SRSAASEIGT 240 LIMSPVAETN DPNKRPAIVC DFFAKGWCIR GTSCRFIHTK DSPKNSHPQS EGDVAAASCS 300 REVKVDEGLR DIPERSRLLG FHDSLASSSG NSFPFSSHLG ILRRQQFQSV LHEESNVGDS 360 TDVQKLHLPK DDLVFLTSYK DAGKDVQTRN WPADDYNNSP IKKGRYSIGN PSSRSSSMEA 420 GVWRHVHSDH TSPLVSHSLN SSSSTLIATG LFPSSRISNW TGFSLPASYS NLDANPLVSQ 480 KRLDSNRDYH ASTRSSAFLK SSSPFSSSEL KNFPPTSVSL HSAELKTKIS SNDWEPSVPF 540 RPSFILPSAL LSFSAKQYDP LHSSIELPKL ANNSFEASFY SERAAVGNRL HQKVHVESVS 600 GTLRPACDAD TNSMSSHNTY HEKVLDNSCY TREPNSPVTE AETVGTSVVY QNGTLTKDKN 660 PLGHSQVKGT TNPNKMGIHG DSRHQSDGSS HQRDTNVDKF RENNEVEVDH LTDGDVQQES 720 KEMRQFRAAL IELVKELLKP KWREGSLSKD AHNKIVKKAV DKILSAFQPQ QIPPTIETVM 780 QYLSDCRPKI SKLVEGYIEK YGNIILVGDW KELLAFHTCL SLTPKMVGLT AWLSLQGKKN 840 DLNIFRPNHE LGIACSFFSW LVCSGFGLSD ACVPLSVDLL LLVRVARAEA FLRCCLAAVC 900 CADWNLIGCG TRIAGPEHTG GQQTKRNRLN SYRLQHLLKS CFVDGMPLFS WCTLVPCFQA 960 LYIRSSGMR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-39 | C3H family protein |