PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G06466

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 356aa MW: 39626.1 Da PI: 7.938

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G06466	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.2	3.7e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ ++ Ro03_G06466 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTAnGN 111 79**************************.89***********8888999*********************************998677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk Lvfy g+ pkg+kt+W+mheyrl Ro03_G06466 112 QKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 142 88*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MESTDSSSGS GHPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVTIIAEV DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTANG NQKVGVKKAL 120 VFYGGKPPKG VKTNWIMHEY RLVNDNNSGA ALKPPDPSNK KASLRLDDWV LCRIYKKNNA 180 QRRMMMEQYH DHHKEEESTN NSMEGMFVSS MPKPSQPKAT NYTALLENDE DNFFEGILSA 240 DQNTTSHDDH NSHHFISSSS KSDVVIPVNS KRQLPSPFWN EAAASMGTHS SSSKRFHTDL 300 NSGGAPGGVD ESNTSFVSML NQLPQNAAFH PNSLLGSLGD GVLRPQFQLP TMNWNS

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MESTDSSSGS GHPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVTIIAEV DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTANG NQKVGVKKAL  120
VFYGGKPPKG VKTNWIMHEY RLVNDNNSGA ALKPPDPSNK KASLRLDDWV LCRIYKKNNA  180
QRRMMMEQYH DHHKEEESTN NSMEGMFVSS MPKPSQPKAT NYTALLENDE DNFFEGILSA  240
DQNTTSHDDH NSHHFISSSS KSDVVIPVNS KRQLPSPFWN EAAASMGTHS SSSKRFHTDL  300
NSGGAPGGVD ESNTSFVSML NQLPQNAAFH PNSLLGSLGD GVLRPQFQLP TMNWNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-119	NAC family protein