PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G06448

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 470aa MW: 51788.8 Da PI: 10.358

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G06448	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.7	4.6e-07	10	42	3	36
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 W t++++ll+ av ++G+++W+++a+++ Rt Ro03_G06448 10 TWGTWLELLLAGAVLRYGTRDWNLVAAELR-ART 42 7****************************9.888 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MGADVIGGST WGTWLELLLA GAVLRYGTRD WNLVAAELRA RTVCPYAFTP QVCKAKYEDL 60 QKCYSGCKAW FEELRKKRME ELRQALKQSE NSIGSLESKL EYLKAEKGEG GCINYGSGQT 120 ESPVPCQKSE GHYPFGKEIC KDEPSAGSFT CEALTSCSPE CQIPATVSAQ DRETKRDSSE 180 HKKISIGAFY GGLGGTLRKR RGKRKRKDCS RDVKEASVGE SGFLDSADAV TALRCIENST 240 SECTCRGDLG SSGAGDWNRG STKDGTNYLL DVFNSILEHK SASVFRHRLD SQKRRRYKKM 300 IHRHMDFDTI GSRIASHSVM SVKELFRDLL LLANNALVFY SKSTREYKSA LLLRDLTTKT 360 LRRHLKDSSG TATSANLSSN TLVCNPPVKP RSARPGNQKL TRKATNAGKA VAKTSNKSKK 420 TGNANADSSP SVESFAVTKK ASTHPRKVRR KTVGQQNATP VKGRKRGRTK

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MGADVIGGST WGTWLELLLA GAVLRYGTRD WNLVAAELRA RTVCPYAFTP QVCKAKYEDL  60
QKCYSGCKAW FEELRKKRME ELRQALKQSE NSIGSLESKL EYLKAEKGEG GCINYGSGQT  120
ESPVPCQKSE GHYPFGKEIC KDEPSAGSFT CEALTSCSPE CQIPATVSAQ DRETKRDSSE  180
HKKISIGAFY GGLGGTLRKR RGKRKRKDCS RDVKEASVGE SGFLDSADAV TALRCIENST  240
SECTCRGDLG SSGAGDWNRG STKDGTNYLL DVFNSILEHK SASVFRHRLD SQKRRRYKKM  300
IHRHMDFDTI GSRIASHSVM SVKELFRDLL LLANNALVFY SKSTREYKSA LLLRDLTTKT  360
LRRHLKDSSG TATSANLSSN TLVCNPPVKP RSARPGNQKL TRKATNAGKA VAKTSNKSKK  420
TGNANADSSP SVESFAVTKK ASTHPRKVRR KTVGQQNATP VKGRKRGRTK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	208	RKRRGKRKRKD
2	200	210	RKRRGKRKRKD
3	292	299	QKRRRYKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	8e-12	MYB_related family protein