PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G06270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 718aa    MW: 78643 Da    PI: 6.2554
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G06270genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25e-07294314526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ GtC+ Gd C +aHg
  Ro03_G06270 294 PCPEFRK-GTCRQGDACEYAHG 314
                  8******.*************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    
MILLGKRLSC DRCRPISMCS GSKRKPSSTD SIMEHEKQEG MRYSFSILLE LAAFDDLDGF  60
KSAVEEDGHV VDEASYWYGR RIGSKKMGFE ERTPLMIAAM FGSMNVLNYI LQTCQVDVNS  120
ACGSDRATAL HCAAAGGSAA SAEVVKLLLA ASADASSFDV NGNQAGDLIA PAYSSAFNSR  180
KKALQVMLKG VSGLEEAFDF SEQMVSETEG QDQQEITTPR ASKDGTERKE YPVDLSLPDI  240
KNGIYSTDEF RMYTFKVKPC SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPEFRK  300
GTCRQGDACE YAHGIFECWL HPAQYRTRLC KDETGCTRRV CFFAHKIEEL RPLYASTGSA  360
VPSPRSFSAG ASMDMGSLSP LSLNSPSVLI PSVSTPPMTP TGASSPMNGN MWQNQPNIAP  420
PTLQLQGSRL KSTLSARDMD LDMEFLSLEN HRRRLRLIDE LSSPSSSWNN GVSSPSAFAA  480
SGNRIGELNR IGGVRPTNLE DAFGSIDPAM LPQLQGLSRD TTASQLQSPT GIQMRQNMNM  540
QLRSSYSGSP SSSPVRGSPL HGFDASSAAA LLSSRSAAFA KQRSQSFIER SAATQNYGFS  600
SPADSGTLKP SNLSNWGSPN GKLDWGIQGE ELNKLRKSAS FGYRNNGGNF STVDEPDVSW  660
VNTLVKDAPP PSRPGPLGFE DQQQQQQQCH LDNGDSEILP AWVEQLYLEQ EQMFSIIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein