PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G05806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 36325.2 Da PI: 7.8216 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++ G g+W++I+++ g+ R++k+c++rw +yl Ro03_G05806 17 RGLWSPEEDEKLMNHINNSGHGSWSSIPKMAGLQRCGKSCRLRWINYL 64 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+++++d ++ lG++ W+ Ia+ m+ gRt++++k++w++ Ro03_G05806 70 RGSFSEQEEKIIIDFHRVLGNR-WAQIAKQMP-GRTDNEVKNFWNS 113 899*******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence |
MSIDMGHHCC SKQKVKRGLW SPEEDEKLMN HINNSGHGSW SSIPKMAGLQ RCGKSCRLRW 60 INYLRPDLKR GSFSEQEEKI IIDFHRVLGN RWAQIAKQMP GRTDNEVKNF WNSCIKKKLI 120 SQGLDPNTHN LVIPHPPSSN SRTSHDSSSL HESSSSTIPT YEYQKPNMVW TGHLQEQNSN 180 ASQPSMGISH VPVISSSYHS YASELAIIIE KCKWGTRGNF EPSTSEPMAT KVEEMLMEPV 240 PQKEKAWEQV EIEKPNVLKR DGNSFGSCNL LDFDFLESTL VPCEMDYHLK PIVDQLAWYN 300 INIGLPKWYQ ATGAATKATP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 2e-78 | MYB family protein |