PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G05779 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | NAC | ||||||||
Protein Properties | Length: 317aa MW: 36732.2 Da PI: 8.0752 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.1 | 4e-54 | 11 | 141 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL++ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ + Ro03_G05779 11 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHLS 107 69****************************.9***************952444443456*************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +g++ktLvfy+grap+g+ktdW+mheyrle Ro03_G05779 108 DSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLE 141 ********************************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence |
MMSAGNGQLT VPPGFRFHPT DEELLYYYLR KKVSYEAIDL DVIREVDLNK LEPWDLKEKC 60 RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIHLSDSK RIGMRKTLVF 120 YTGRAPHGQK TDWIMHEYRL EDHHDNINVH EVQEDGWVVC RVFKKKNHIN RGFQPEFGHH 180 QEVEHDLITH MKASGSGHNQ VVLDHHHHHH HHQPKQNHHH HLEASLYDYP STFDGTMHLP 240 QLFSPESAAV AAANSSSFVS APNNNMSALN PMDLESSSCG CRNRYYFNHA EIIPISVPWL 300 QRINYSCRHF KVLQVAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.1 | 1e-95 | NAC family protein |