PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G05776

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 497aa MW: 53814.7 Da PI: 7.9533

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G05776	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.9	2e-09	141	165	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+G+ CkF H+ Ro03_G05776 141 GEKDCAHYMQTRTCKFGEGCKFDHP 165 7889********************8 PP
2	zf-CCCH	33.4	7.4e-11	194	218	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C++f++t Ck+G rCkF+H++ Ro03_G05776 194 APDCPYFLKTQRCKFGLRCKFNHPK 218 589********************96 PP
3	zf-CCCH	39.6	8.9e-13	241	265	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+CkyG++CkF+H++ Ro03_G05776 241 EPPCAFYLKTGQCKYGATCKFNHPK 265 79*********************96 PP
4	zf-CCCH	37.1	5.3e-12	315	340	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG +C+++H+ Ro03_G05776 315 PGEADCPFYLKTGSCKYGVTCRYNHP 340 57899********************9 PP
5	zf-CCCH	40.2	5.6e-13	396	420	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++++tG+CkyG++C+F+H+ Ro03_G05776 396 GQTECEYYMKTGECKYGAQCRFHHP 420 6789********************8 PP
6	zf-CCCH	39.4	1e-12	452	476	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++++tGtCkyG++CkF H+p Ro03_G05776 452 SAICVYYLKTGTCKYGATCKFDHPP 476 579********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MASHLYSFGA AQSAPAAATP TPGLSTVYTP RSLAESYHSD PALRYVSGSD PSSMYLAGTD 60 GLGAYSDAAR ATSYMMSSWP APDAEPGPPG FKRTSEALYH QALLGAHNQI GQMEAWYSTN 120 PLAKRPRFEN TSLPIYPQRP GEKDCAHYMQ TRTCKFGEGC KFDHPIWVPD GGIPDWKEVP 180 LVAPSESLPE RPGAPDCPYF LKTQRCKFGL RCKFNHPKDK LAAAGASENG DVYALPERPS 240 EPPCAFYLKT GQCKYGATCK FNHPKDIQIP SASQENKTGE TETALKTEGS EISVKPLVSF 300 TPALLYNSKE LPVRPGEADC PFYLKTGSCK YGVTCRYNHP DRYDINPSVA AISYPLAASA 360 VAGFNIGVAN PAAFTYQTLA QPTVGVDPTV YPQRFGQTEC EYYMKTGECK YGAQCRFHHP 420 IDRPAVALST TKPSQQENVK LTLAGLPRRE GSAICVYYLK TGTCKYGATC KFDHPPPGEV 480 VALAASQAKS ESTGGKA

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MASHLYSFGA AQSAPAAATP TPGLSTVYTP RSLAESYHSD PALRYVSGSD PSSMYLAGTD  60
GLGAYSDAAR ATSYMMSSWP APDAEPGPPG FKRTSEALYH QALLGAHNQI GQMEAWYSTN  120
PLAKRPRFEN TSLPIYPQRP GEKDCAHYMQ TRTCKFGEGC KFDHPIWVPD GGIPDWKEVP  180
LVAPSESLPE RPGAPDCPYF LKTQRCKFGL RCKFNHPKDK LAAAGASENG DVYALPERPS  240
EPPCAFYLKT GQCKYGATCK FNHPKDIQIP SASQENKTGE TETALKTEGS EISVKPLVSF  300
TPALLYNSKE LPVRPGEADC PFYLKTGSCK YGVTCRYNHP DRYDINPSVA AISYPLAASA  360
VAGFNIGVAN PAAFTYQTLA QPTVGVDPTV YPQRFGQTEC EYYMKTGECK YGAQCRFHHP  420
IDRPAVALST TKPSQQENVK LTLAGLPRRE GSAICVYYLK TGTCKYGATC KFDHPPPGEV  480
VALAASQAKS ESTGGKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein