PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G05776
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 497aa    MW: 53814.7 Da    PI: 7.9533
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G05776genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-09141165226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C ++++t tCk+G+ CkF H+
  Ro03_G05776 141 GEKDCAHYMQTRTCKFGEGCKFDHP 165
                  7889********************8 PP

2zf-CCCH33.47.4e-11194218327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   + C++f++t  Ck+G rCkF+H++
  Ro03_G05776 194 APDCPYFLKTQRCKFGLRCKFNHPK 218
                  589********************96 PP

3zf-CCCH39.68.9e-13241265327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C f+++tG+CkyG++CkF+H++
  Ro03_G05776 241 EPPCAFYLKTGQCKYGATCKFNHPK 265
                  79*********************96 PP

4zf-CCCH37.15.3e-12315340126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ++++ C+f+++tG CkyG +C+++H+
  Ro03_G05776 315 PGEADCPFYLKTGSCKYGVTCRYNHP 340
                  57899********************9 PP

5zf-CCCH40.25.6e-13396420226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++ +C ++++tG+CkyG++C+F+H+
  Ro03_G05776 396 GQTECEYYMKTGECKYGAQCRFHHP 420
                  6789********************8 PP

6zf-CCCH39.41e-12452476327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   ++C ++++tGtCkyG++CkF H+p
  Ro03_G05776 452 SAICVYYLKTGTCKYGATCKFDHPP 476
                  579********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    
MASHLYSFGA AQSAPAAATP TPGLSTVYTP RSLAESYHSD PALRYVSGSD PSSMYLAGTD  60
GLGAYSDAAR ATSYMMSSWP APDAEPGPPG FKRTSEALYH QALLGAHNQI GQMEAWYSTN  120
PLAKRPRFEN TSLPIYPQRP GEKDCAHYMQ TRTCKFGEGC KFDHPIWVPD GGIPDWKEVP  180
LVAPSESLPE RPGAPDCPYF LKTQRCKFGL RCKFNHPKDK LAAAGASENG DVYALPERPS  240
EPPCAFYLKT GQCKYGATCK FNHPKDIQIP SASQENKTGE TETALKTEGS EISVKPLVSF  300
TPALLYNSKE LPVRPGEADC PFYLKTGSCK YGVTCRYNHP DRYDINPSVA AISYPLAASA  360
VAGFNIGVAN PAAFTYQTLA QPTVGVDPTV YPQRFGQTEC EYYMKTGECK YGAQCRFHHP  420
IDRPAVALST TKPSQQENVK LTLAGLPRRE GSAICVYYLK TGTCKYGATC KFDHPPPGEV  480
VALAASQAKS ESTGGKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0C3H family protein