PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G05747 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | NAC | ||||||||
Protein Properties | Length: 349aa MW: 39613 Da PI: 4.7899 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.9 | 3.2e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd++v s + Ro03_G05747 6 LPPGFRFHPTDEELVAYYLDRKINGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVNS-N 101 79****************************.99**************96435566888*************************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kktLv+y+grap+g +t+Wvmheyrl Ro03_G05747 102 RRAVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 999***************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence |
MAPMSLPPGF RFHPTDEELV AYYLDRKING RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVNS NRRAVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLTDSVCGS PSTSLKDSYA LCRIFKKTIQ IPKNNKEEKT TGNAVSNKKL 180 LGEDTSTGIN EGEASKGIET DQDYENYSNP DYPKFLSDTS SSDLTQGTPT ETGIADDLQA 240 PFASDEANSS ANYNLYSLGA HCSSNNLFQE TYMPNDTSFH NYQFPYPPLE LEDFPMINLA 300 AETNTSKPQI IEDYMSYDKL KDCMNGTLEE IFSLCSSQDN NSVALPMQD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 1e-111 | NAC family protein |