PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G05746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MYB | ||||||||
Protein Properties | Length: 337aa MW: 38005.6 Da PI: 6.7893 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.5 | 1.5e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l++ v+ +G g+W++++r+ g+ R++k+c++rw +yl Ro03_G05746 13 RGLWSPEEDDKLIKHVTTHGHGSWSSVPRHAGLERCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.9 | 1e-17 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++ Ro03_G05746 66 RGSFTSEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89********************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence |
MGHRCCGKHK VKRGLWSPEE DDKLIKHVTT HGHGSWSSVP RHAGLERCGK SCRLRWINYL 60 RPELKRGSFT SEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL 120 DPQTHNLISS HKRSAASNKI TGSSNTKSQS HIDQKRPVFT VNNISQMIDS STEISYSISQ 180 PIVSNRTDTQ PPTVQPIMAA PTDNQYLVQN PNSCWTSVTD IPIFPDSTLN ISSSSSSSVF 240 GHLDDNNFIW AAGAEPFEAA PRAMDLQGEQ SNEQVVQVQQ EKDKLLEMEM KAIQDMDIAA 300 SFDQNSNFDF SLVEYYSTLM SGVMPQDYSV ADFTWNF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 1e-89 | MYB family protein |