PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G05736

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 389aa MW: 43388.8 Da PI: 8.0852

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G05736	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.7	1.3e-33	35	89	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Ro03_G05736 35 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 89 79****************************************************8 PP
2	Myb_DNA-binding	72.4	7e-23	37	88	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT e++e++vdav+qlGg+ t+ktI+r mg kg+tl+++ks++qk++ Ro03_G05736 37 RLRWTVELHERFVDAVTQLGGPdkaTPKTIMRVMGvKGLTLYHLKSHLQKFR 88 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MFQQHKKPSS MNSHESHRPM CVQGDSGLVL TTDPKPRLRW TVELHERFVD AVTQLGGPDK 60 ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQPHKEFNDH SIKDHASPLD LQRNSASSSG 120 IIGRSMNDNN YHMVDAIRMQ MEVQRRLHEQ LEVQKHLQLR IEAQGKYMQS ILEKACQTLA 180 GENNMAAAAG SYKGNIGNNQ GVNPADMGNL KDFNSPLNFP SFQDLNIYGS GDHLDQLQHN 240 SLDRPPLDHH SFMPNNDSIN CMGSKKRPSP YNSGNSSGKS PLIWSDDLRL QDLGTAASCL 300 GPQDDHQIQI APPSIERGTD QIESISDIYE SKPMIQGDEK KFEAGNKLEK PSPRRAAMGS 360 ERMNPMINAG VRQGRNSPFG HTIFLGDDV

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MFQQHKKPSS MNSHESHRPM CVQGDSGLVL TTDPKPRLRW TVELHERFVD AVTQLGGPDK  60
ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQPHKEFNDH SIKDHASPLD LQRNSASSSG  120
IIGRSMNDNN YHMVDAIRMQ MEVQRRLHEQ LEVQKHLQLR IEAQGKYMQS ILEKACQTLA  180
GENNMAAAAG SYKGNIGNNQ GVNPADMGNL KDFNSPLNFP SFQDLNIYGS GDHLDQLQHN  240
SLDRPPLDHH SFMPNNDSIN CMGSKKRPSP YNSGNSSGKS PLIWSDDLRL QDLGTAASCL  300
GPQDDHQIQI APPSIERGTD QIESISDIYE SKPMIQGDEK KFEAGNKLEK PSPRRAAMGS  360
ERMNPMINAG VRQGRNSPFG HTIFLGDDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-128	G2-like family protein