PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G05331
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 287aa    MW: 32839 Da    PI: 9.998
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G05331genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.7e-312777151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyeys+
  Ro03_G05331 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYSN 77
                 79***********************************************95 PP
2K-box97.61.8e-32126219497
        K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                  s++ s++ea+++++qqe++kL+++i  Lq+++R ++ e+L+++s+k+L+ +e++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k
  Ro03_G05331 126 SNNGSVSEATTQYYQQEANKLRAQITALQNSNRGYMAEGLSNMSIKDLRGVESKLEKAISRIRSKKNELLFAEIEYMQKRELDLHNNNQLLRAK 219
                  444459**************************************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MAYENKPNMS LDADVQRRLG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE  60
VALIVFSNRG RLYEYSNNNR PTTQAVTPLL AQSNLLDTSL IARQLWTPGN VRETIERYKK  120
ACADSSNNGS VSEATTQYYQ QEANKLRAQI TALQNSNRGY MAEGLSNMSI KDLRGVESKL  180
EKAISRIRSK KNELLFAEIE YMQKRELDLH NNNQLLRAKG QIAENERQQQ SINAIAGAGH  240
GSYEIMQSSQ QFHEARNYFQ VNALQPNLQY SRHDQISLQL QYGSKIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-101MIKC_MADS family protein