PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G05304
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family BES1
Protein Properties Length: 337aa    MW: 35957.1 Da    PI: 7.9699
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G05304genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8222273.5e-7031531149
       DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqssl 98 
                  ++++r+ptwkErEnnk+RERrRRaiaakiy+GLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp ++++++g s+sasp+ss+q s+
  Ro03_G05304   3 TSGTRMPTWKERENNKKRERRRRAIAAKIYSGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPVDRMDIMGGSTSASPCSSYQPSP 100
                  5899********************************************************************************************** PP

       DUF822  99 kssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsss 149
                   +s+ +sp++sy++sp+sssfpsp+++  + + +a  +sl+p+l++ls++ ss
  Ro03_G05304 101 CASYNPSPCASYNPSPASSSFPSPARYPANVNGNAdaNSLIPWLKTLSSSGSS 153
                  **************************99887665566*********9985443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MMTSGTRMPT WKERENNKKR ERRRRAIAAK IYSGLRMYGN YKLPKHCDNN EVLKALCNEA  60
GWTVEEDGTT YRKGCKPVDR MDIMGGSTSA SPCSSYQPSP CASYNPSPCA SYNPSPASSS  120
FPSPARYPAN VNGNADANSL IPWLKTLSSS GSSSATSKLP QLFIPGGSIS APVTPPLSSP  180
TSRTPRTKSD WDEAVAGSNW SNQHYSFLPS STPPSPGRQV LPDSGWLAGL QSGPSSPTFS  240
LVSRNPFGLK EALSGGGSRM WTPGQSGTCS PVVAAGLDHS GDVPMSDGMA AEFAFGSNAS  300
GLVKPWEGER IEECVSDDLE LTLGSTKTRQ ILDMEID
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-105BES1 family protein