PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G05285
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 276aa    MW: 30439.6 Da    PI: 5.0641
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G05285genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.3e-3190148259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY++eHnh+
  Ro03_G05285  90 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLVITYSSEHNHP 148
                  69*************************998****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MESPTFFNKH FMSDIDQEDY DINNNNNNNS TPENSSGSPP PPPCAAFNDV VYSKITSASS  60
PKKSTRRAIQ KRVVSIPIKE NSNTNTPPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG  120
CPARKQVERS RVDPTMLVIT YSSEHNHPWP ASRSHHGAKP EIKTETREEI AAQPEPDPEE  180
RRFADLGDQS SLVIIPNADE FGWFADMETT SSRVLESPIF AESSSGGADS ADVAGMLFPM  240
GEEDESLFAD LGELPECSLV FRHRAVGGVG PQAQIC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-81WRKY family protein