PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G05248

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 278aa MW: 31327.9 Da PI: 10.326

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G05248	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.9	4.2e-16	29	116	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a ++ +l+rg+l++++W+ev++ + + ++ +r+ +qCk++++ ++k+yk +k++ +++ +s++p+fd+l+ Ro03_G05248 29 CWSEDATSTLVDAWGRRYLELNRGNLRQKDWQEVADSVnalhgHTKKTHRTDVQCKNRIDTIKKKYKVEKARVSGG---LTSSWPFFDRLD 116 7**************************************99999***********************997...3458****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MGDLTDSLTP STATPNSSNP RPMPVREDCW SEDATSTLVD AWGRRYLELN RGNLRQKDWQ 60 EVADSVNALH GHTKKTHRTD VQCKNRIDTI KKKYKVEKAR VSGGLTSSWP FFDRLDSLIG 120 SNVKKPSPSL SPSPPVAVPL PLSYRKPSPA RPVVTAVALP QKRLARAIER FGEVYQRVEA 180 EKLRQMVELE KQRMQFAKDL EVQRMRMFMD TQVQLERIKH GKRPGSNERA RAFLSCIVQR 240 LIKIFIANHV QESCNGTGEA YVASVDQVHI VPADTGLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	2e-51	Trihelix family protein