PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G05190
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 296aa    MW: 33140.3 Da    PI: 5.4978
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G05190genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.52e-19124174255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++a+++++g
  Ro03_G05190 124 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAALAYDKAALRIRG 174
                  8********.**********3...2234*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MAVHSDDHDA AAAPEAILEN VWASFIGVDG VNEETRSTPE MSKSWEELPS LDGREGSMEI  60
LQRLPSLGRW MSIGAEAWEE ILDTFVTPSH EIEKSCNEKL QGIGDAKPDV EAKVERVEKV  120
ATKHYRGVRR RPWGKYAAEI RDSSRKGARV WLGTFETAEE AALAYDKAAL RIRGTKAHLN  180
FPIETVAKAM GLDHCSFINI DSSTTSSRRS LNPRKRGLRE WEENVEAMTE EPALKTNASM  240
GNMFGDEFDV FEFQDLGSRS TSGFILGLRD ARVSKTEHVT KFAMLSARLQ LYINKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.13e-40ERF family protein