PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G05189
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 271aa    MW: 30770.3 Da    PI: 8.9271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G05189genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-1962112255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd      ++ +r++lg+f taeeAa a+++a+ +++g
  Ro03_G05189  62 HYRGVRRRP-WGKYAAEIRD----SaRHgARVWLGTFNTAEEAAMAYDRAAFRMRG 112
                  8********.**********....33236*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MVLTSQNELP LNENDSQDMV ICQVLNEATA FNHSSLPQRH QTMNHESNSS GLEPVKDIRK  60
KHYRGVRRRP WGKYAAEIRD SARHGARVWL GTFNTAEEAA MAYDRAAFRM RGTKAMLNFP  120
SELVSPSSSI ERVKPSFIVP SCISTTIEAP KISESESNTS TIVEARHISV GSTLGFGWRL  180
TGRRERWCSF CFWVVVRFSF FFPFSFEMGT YHPSIVTGFQ LTDTYTLLMF LLVWFMERHK  240
KFVSPAVVNA IGLFPPMFSI IDLGLDLTSP P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.17e-26ERF family protein