PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G05169
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 334aa    MW: 37562.2 Da    PI: 8.354
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G05169genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.83.2e-34551951128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 
                  lp+G++F+Ptd+e++ ++L++kv +++      +  +e+i+++d    i++++P++Lp  v++e +  +fF++ +k+y+tg+rk+r+++      + +
  Ro03_G05169  55 LPAGVKFDPTDQEIL-QHLEAKVLSDTrklhplI--DEFIPTLDgengICSTHPEKLP-GVNKEGQIRHFFHRPSKAYTTGTRKRRKVHteedgsETR 148
                  799***********9.99****999996664322..234655555556**********.666677788******************744446555778 PP

          NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  W++tgk+++vl+ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Ro03_G05169 149 WHKTGKTRPVLV-NGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 195
                  ************.999***********66589**************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MTWHSDEEEE EQRAIQSITP SSAPYSNKNN DLTCPSCGHP IDFQDQAGIH DLPGLPAGVK  60
FDPTDQEILQ HLEAKVLSDT RKLHPLIDEF IPTLDGENGI CSTHPEKLPG VNKEGQIRHF  120
FHRPSKAYTT GTRKRRKVHT EEDGSETRWH KTGKTRPVLV NGAVKGFKKI LVLYTNYGRQ  180
RKPEKTNWVM HQYHLGNNEE EKDGELVLSK VFYQTQPRQC GTATPGIKDG GSPLLNPFDS  240
HHHLHHKGQV NIRSGQDGNS LPLPLPPKKG GVMEFYNHPG PFMNYEHPHL IQGGQNREIP  300
AQLIPNLVIQ GDGSSLFRYT AADTSKGKLI QRKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-119NAC family protein