PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G02170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 227aa    MW: 24880 Da    PI: 6.4045
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G02170genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.59.9e-43521511100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++
  Ro03_G02170  52 PCAACKILRRRCAEKCVLAPYFPPSEPAKFTIAHRVFGASNIIKFLQDLPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQ 149
                  7**********************************************************************************************999 PP

       DUF260  99 ee 100
                  +e
  Ro03_G02170 150 AE 151
                  76 PP

Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MECSTDTSIN TNATYASSTP FSHHSPSSPS SSPPITPTLT QTPPPQNVVV SPCAACKILR  60
RRCAEKCVLA PYFPPSEPAK FTIAHRVFGA SNIIKFLQDL PESQRADAVS SMVYEASARI  120
RDPVYGCAGA ICHLQKQVSE LQAQLAKAQA EVVNMQCQQT NLVALLMEMA KPDHHEQGSP  180
DQQSLDNYNF ITSPHPHSNM INQSNLSFLD DHNNSALGSF WELPLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.18e-73LBD family protein