PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G02170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 24880 Da PI: 6.4045 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.5 | 9.9e-43 | 52 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++ Ro03_G02170 52 PCAACKILRRRCAEKCVLAPYFPPSEPAKFTIAHRVFGASNIIKFLQDLPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQ 149 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Ro03_G02170 150 AE 151 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MECSTDTSIN TNATYASSTP FSHHSPSSPS SSPPITPTLT QTPPPQNVVV SPCAACKILR 60 RRCAEKCVLA PYFPPSEPAK FTIAHRVFGA SNIIKFLQDL PESQRADAVS SMVYEASARI 120 RDPVYGCAGA ICHLQKQVSE LQAQLAKAQA EVVNMQCQQT NLVALLMEMA KPDHHEQGSP 180 DQQSLDNYNF ITSPHPHSNM INQSNLSFLD DHNNSALGSF WELPLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 8e-73 | LBD family protein |