PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G02132

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 469aa MW: 51321 Da PI: 7.094

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G02132	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	5.8e-17	156	205	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Ro03_G02132 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 205 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MLDLNLNVLG SAQEDVGSFH GMFPEGSGSA TQMDESGTSN SSVVNADASS TNDDSCSARA 60 AVTTFNFDIL KVGGEDDVVV TKELFPVIGG LNNWPEQGQQ YSPSSSARQN LIELGFDHGG 120 PAEVRLVKQK LQQQAPPPPP QQQVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH AAARAYDRAA IKFRGVDADI NYNLSDYEED LKQMKNLTKE EFVHILRRQS 240 TGFSRGSSRY RGVTLHKCGR WEARMGQFLG KKAYDKAAIK CNGREAVTNF EASTYEGEMI 300 SDTGNEDGNH NLDLNLGISP PSFANGQKQG EGCLQFHSGP YDGQNGKNMR MEHNENSTMS 360 DPPFKGLIMT SEHPPLWNGV YPSFFPTQER AIETRIALGS QGPPPSWAWQ MHGQVSATPM 420 PLFSTAASSG FSFTATTPPA AVLPLNRSNP PALNLCFTSS ATATPRTSQ

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MLDLNLNVLG SAQEDVGSFH GMFPEGSGSA TQMDESGTSN SSVVNADASS TNDDSCSARA  60
AVTTFNFDIL KVGGEDDVVV TKELFPVIGG LNNWPEQGQQ YSPSSSARQN LIELGFDHGG  120
PAEVRLVKQK LQQQAPPPPP QQQVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAH AAARAYDRAA IKFRGVDADI NYNLSDYEED LKQMKNLTKE EFVHILRRQS  240
TGFSRGSSRY RGVTLHKCGR WEARMGQFLG KKAYDKAAIK CNGREAVTNF EASTYEGEMI  300
SDTGNEDGNH NLDLNLGISP PSFANGQKQG EGCLQFHSGP YDGQNGKNMR MEHNENSTMS  360
DPPFKGLIMT SEHPPLWNGV YPSFFPTQER AIETRIALGS QGPPPSWAWQ MHGQVSATPM  420
PLFSTAASSG FSFTATTPPA AVLPLNRSNP PALNLCFTSS ATATPRTSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	1e-108	AP2 family protein