PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G02072
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 740aa    MW: 83532.3 Da    PI: 10.001
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G02072genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.3e-142533351695
                  EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
           B3  16 lvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                  l +p +fa+++  +g++++   ++l+ ++g +W  k+++   +  +r  + +GW e v++n+L++gD +vF+l+++  + +l+++
  Ro03_G02072 253 LNIPSSFANQYilQGDHTR--RVSLQIPNGGTWPAKCTVslYGEHDRARIHSGWTELVQDNRLQVGDAIVFELMEQqPKVTLKIH 335
                  78*********88666555..7***************887778888899***********************9976566666665 PP
2B338.12.7e-125846473399
                  -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
           B3  33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                  +  ++l+ ++g +W+++l  +++ ++++l+kGW eF+k   L++g f++F+++g  s+f  +v++f+k
  Ro03_G02072 584 GHSIVLTVPNGAVWRMEL--KRSNDSFWLEKGWLEFAKFYSLEQGFFIIFTHEGVdSCF--RVRIFNK 647
                  45799*************..*********************************998999..9999987 PP
3B343.46e-146677383199
                  .--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
           B3  31 eesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                    s+++ l+ ++g++W+ k+++  + +++   l +GW +F+ +ngL++gD +v++l+++  + +++v++fr+
  Ro03_G02072 667 GASRKVNLQIPNGKTWSAKCSVclCVNKKYARLCGGWTKFAAENGLQVGDACVLELIKErAKMTFLVHIFRA 738
                  46789***************88887777778899***********************88799999***9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    
MASSSRQQAK GVAFPAETPS KRSSLNTQMA SSSRQKGKGV AFPVETPRKR PRLNTQMAST  60
SKQKGKGIAF PVETPGFFKV VLDYALQDGR LKLEGFVASK FGNFLSDKLL LKAPNGEVWP  120
IELTRDDVID SLWLEKGWPE FAKFYSLENG CFLFFSYEGI SSCLKVRIFN KHGLEVAYFF  180
RSSHDEEPNS CTGMHENLVM SVSKCAFRII FLWNLNHKNS TVYDEAFSRA SRFLSNRPFF  240
AVKLQCSYIV RPLNIPSSFA NQYILQGDHT RRVSLQIPNG GTWPAKCTVS LYGEHDRARI  300
HSGWTELVQD NRLQVGDAIV FELMEQQPKV TLKIHWKKLA TPPIRINVVI EKRKGKRLAI  360
PGKTPGFFKV VLNEALQDGR LQIPTSFANK YICTRGRTRN VDLRVPYGEI WSAESSVKAY  420
GRGGEYAKIH GGWKKFARDN RLQVAGFDPF ISMVGFLHIG VLDHKETSKY YILLISDSES  480
EEICYTEMNT SGKAYCTLRI SAQPLHHAGR SLNGASTLIG CFNFQPPTFS FVLGLVMASS  540
SRRKNSDKGV AFPSFFKAIV DEALEDGKLE IEGYVAMKYK DFLGHSIVLT VPNGAVWRME  600
LKRSNDSFWL EKGWLEFAKF YSLEQGFFII FTHEGVDSCF RVRIFNKSSL EIDYPFKSSQ  660
AKFSKVGASR KVNLQIPNGK TWSAKCSVCL CVNKKYARLC GGWTKFAAEN GLQVGDACVL  720
ELIKERAKMT FLVHIFRAHI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351358EKRKGKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-19B3 family protein