PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G02048

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 331aa MW: 35967.7 Da PI: 10.2496

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G02048	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	41	63	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Ro03_G02048 41 FVCKTCDREFSSFQALGGHRASH 63 89**********99999998887 PP
2	zf-C2H2	11.6	0.00085	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg Fs L H+r+H Ro03_G02048 94 HECPICGIEFSIGQALGGHMRRH 116 79********************9 PP
3	zf-C2H2	10.6	0.0017	209	231	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Ro03_G02048 209 FVCKTCNREFSSFQALGGHRASH 231 89**********99999998887 PP
4	zf-C2H2	11.3	0.0011	260	282	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H Ro03_G02048 260 HECPICGLEFAVGQALGGHMRRH 282 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MKRGRADEQT LDLVSCLMLL SKVGQNDSSS IKKPKTADGV FVCKTCDREF SSFQALGGHR 60 ASHKKLKPMA GNGASDLLQL AQSSPSSPGK PKTHECPICG IEFSIGQALG GHMRRHRDVM 120 NSAAADRIRA AAVPVLKKSN SSKRVSCLNL DLNLAPPGYH DLTKLHLILA MKRSREDDIQ 180 TLDLVNCLML LSNNVSSSIK KQKTSDRVFV CKTCNREFSS FQALGGHRAS HNKPKLMAGG 240 ADLLQLAQAL PSLPAKPKKH ECPICGLEFA VGQALGGHMR RHRDDMNSAA AVPVLKKSNS 300 SKRMSCLNLD LNLAPPGYQH LYDLTKLQLI S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	4e-35	C2H2 family protein