PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G02039

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 135aa MW: 14818.9 Da PI: 9.0959

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G02039	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.0005	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Ro03_G02039 42 FVCKTCNREFSSFQALGGHRASH 64 89**********99999998887 PP
2	zf-C2H2	14.8	8.5e-05	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg+ F L H+r+H Ro03_G02039 94 HECPICGMEFAVGQALGGHMRRH 116 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence
MKRGREDEYQ TQDLVNCLML LSKVDPNDSS SIRKQSSSGH VFVCKTCNRE FSSFQALGGH 60 RASHKKAKLM PAGGAADLFQ LAQPPNEPVK PKTHECPICG MEFAVGQALG GHMRRHRDVM 120 SSAAERIREA AVPVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	3e-37	C2H2 family protein