PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G36006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | HB-other | ||||||||
Protein Properties | Length: 396aa MW: 44668 Da PI: 9.4315 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.2e-20 | 4 | 60 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r Rt++t+ q e+Le+++ +++ps++++eeL+k+l+L +qV+vWF NrRak+++ Ro02_G36006 4 KRLRTKWTPIQRETLEKAYSAEKTPSEATKEELSKQLELGYEQVTVWFMNRRAKDRR 60 789****************************************************97 PP | |||||||
2 | Homeobox | 44.3 | 3e-14 | 66 | 116 | 3 | 53 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 k+ ++t++ql +Le+ ++ +++p+ ++reeL kklgLte qV+ W+ +R Ro02_G36006 66 KKSRMTRHQLATLEKTYAAEKNPTVSKREELGKKLGLTEIQVRLWYNKKRF 116 56679*****************************************99995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence |
MAFKRLRTKW TPIQRETLEK AYSAEKTPSE ATKEELSKQL ELGYEQVTVW FMNRRAKDRR 60 QGIVAKKSRM TRHQLATLEK TYAAEKNPTV SKREELGKKL GLTEIQVRLW YNKKRFEDQE 120 KEKKEKKKRG TAANKPRKSA VASSCDHLAF VSSDLTGIPN PDTPCKRLEN LDALMVDVTD 180 LISKPSPCPN FHPLDDKSFV DQDKLTLAKK GLQKIFDCGV EALADPQVQE EFLAYSATLL 240 LVDSCPSELK ANLSSFRGNL SEETCAFLQA QHELKVASDL AASITERRFV LRFHHSKYAE 300 VKKQIIASDE KVANLKAMIK RLESSLATEE SNRAKIDEVL DTIETGVITA RDGLVSDIAQ 360 VSAMEGTTKA ANQLVAQRQS AWESLRNAFT ENRNFA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 60 | NRRAKDRR |
2 | 113 | 129 | KKRFEDQEKEKKEKKKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 8e-13 | HB-other family protein |