PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G35901

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 1001aa MW: 113390 Da PI: 6.8151

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G35901	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.3	4.3e-16	214	290	17	99
E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +pk+f +e+ ++ ++ + +l++++g++W vk ++ g+ ++++GWk F+++n++k D+++F+l+ s+ ++vv+++ k Ro02_G35901 214 AIPKDFSREYlSL---GKYEFSLKNSKGKKWVVKT--VGSNGKLFFSAGWKAFARDNQIKLYDVCTFELE--SGNKMVVHICGK 290 79******633...3468***********..999999*********************85..68889**976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence
MCYVKTGNVV SARELFDQMI ERDTFSWNTM ISGYVHMSEM EEASNLFRKM PNPDTLSWNS 60 MILGYAQVGR LKLAHDFFDR MPQKSLVAWN SMIAGYEKNE DFTGAVKWNS KARSLIDTLN 120 LQFLVCVWVG GSASWHADSS ADYNTKQTQE STELVKSKFP HFTSTIYVPY NVVRNTIFLS 180 PLLLTIRPIH ANRIVAQHIT DCEFKYWMSF DLQAIPKDFS REYLSLGKYE FSLKNSKGKK 240 WVVKTVGSNG KLFFSAGWKA FARDNQIKLY DVCTFELESG NKMVVHICGK MSNQDEGTKK 300 DYSTAILKRK KAPNRLIVDE AVVDDNSIIQ LHPETMEKLQ LFRGDTVLIK GKKRRDTVCI 360 ALADDTCEEP KIRMNKVVRN NLRVRLGDVV SIHQCTDVKY GKRVHILPLD DTIEGITGNL 420 FDAYLKPYFQ ETYRPVRKGD LFLVRGGMRS VEFKVIETDP CTPEYCVVAP DTEIFCEGEP 480 VRREDEERLD EVGYDDVGGV RKQMAQIREL VELPLRHPQL FKSIGVKPPK GILLYGPPGT 540 GKTLIARAVA NETGAFFFCI NGPEIMSKMA GESESNLRKA FEEAEKNAPS IIFIDEIDSI 600 APKREKTNGE VERRIVSQLL TLMDGLKSRA HVMVMGATNR PNSIDPALRR FGRFDREIDI 660 GVPDEVGRLE VLRIHSKNMK LAEDVDLERV AKDTHVPNVT WDAIGGLENV KRELQETVQY 720 PVEHPEKFEK FGMSPSKGVL FYGPPGCGKT LLAKAIANEC QANFISIKGP ELLTMWFGES 780 EANVREIFDK ARASAPCVLF FDELDSIATQ RGATNRPDII DPALLRPGRL DQLLYIPLPD 840 EESRYQIFKS CLRKSPVSKY VDLRALAHYT TGFSGADITE ICQRACKYAI RDNIEKDIER 900 ERRRSQNPEV MEEDEDEVSE ITAAHFEESM KYARRSVSDS DIRKYQAFAQ TLHQARGLGA 960 NEFKFAATSS GAAVGSDPFA TTNAGFSEAL LCYFLHREPL Y

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence

MCYVKTGNVV SARELFDQMI ERDTFSWNTM ISGYVHMSEM EEASNLFRKM PNPDTLSWNS  60
MILGYAQVGR LKLAHDFFDR MPQKSLVAWN SMIAGYEKNE DFTGAVKWNS KARSLIDTLN  120
LQFLVCVWVG GSASWHADSS ADYNTKQTQE STELVKSKFP HFTSTIYVPY NVVRNTIFLS  180
PLLLTIRPIH ANRIVAQHIT DCEFKYWMSF DLQAIPKDFS REYLSLGKYE FSLKNSKGKK  240
WVVKTVGSNG KLFFSAGWKA FARDNQIKLY DVCTFELESG NKMVVHICGK MSNQDEGTKK  300
DYSTAILKRK KAPNRLIVDE AVVDDNSIIQ LHPETMEKLQ LFRGDTVLIK GKKRRDTVCI  360
ALADDTCEEP KIRMNKVVRN NLRVRLGDVV SIHQCTDVKY GKRVHILPLD DTIEGITGNL  420
FDAYLKPYFQ ETYRPVRKGD LFLVRGGMRS VEFKVIETDP CTPEYCVVAP DTEIFCEGEP  480
VRREDEERLD EVGYDDVGGV RKQMAQIREL VELPLRHPQL FKSIGVKPPK GILLYGPPGT  540
GKTLIARAVA NETGAFFFCI NGPEIMSKMA GESESNLRKA FEEAEKNAPS IIFIDEIDSI  600
APKREKTNGE VERRIVSQLL TLMDGLKSRA HVMVMGATNR PNSIDPALRR FGRFDREIDI  660
GVPDEVGRLE VLRIHSKNMK LAEDVDLERV AKDTHVPNVT WDAIGGLENV KRELQETVQY  720
PVEHPEKFEK FGMSPSKGVL FYGPPGCGKT LLAKAIANEC QANFISIKGP ELLTMWFGES  780
EANVREIFDK ARASAPCVLF FDELDSIATQ RGATNRPDII DPALLRPGRL DQLLYIPLPD  840
EESRYQIFKS CLRKSPVSKY VDLRALAHYT TGFSGADITE ICQRACKYAI RDNIEKDIER  900
ERRRSQNPEV MEEDEDEVSE ITAAHFEESM KYARRSVSDS DIRKYQAFAQ TLHQARGLGA  960
NEFKFAATSS GAAVGSDPFA TTNAGFSEAL LCYFLHREPL Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64100.2	8e-10	NAC family protein