PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G35659

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 631aa MW: 70605.6 Da PI: 6.0744

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G35659	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	89.3	3.2e-28	555	615	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYGqKe+ g+++pr+YYrCt++ gC ++k+v+r +ed++++eitY+g+H++ Ro02_G35659 555 LDDGYSWRKYGQKEILGAKYPRGYYRCTHRntqGCLATKQVQRMDEDQTILEITYRGNHTC 615 59*************************98889***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
MTSLALNFLG GAPFQLLYDS VKTAIGRTRK FRTHLINLKS TLDCLQIIQQ ISDNNVQLSL 60 PNDITQDVLV KMEDGAALID ELSSLSLCSI HVWGNCCNCI KPNYADQLDE LDRSLRRLLE 120 LLKLEQMRNV TLLMLKLDEV QRGQSDILKT LQENRGARAE QQVIQRIQEN GQHREGNGGG 180 GGGGGAAPAL GAVFGTLVDV VIQVKVKNLI FKRLLGELKS SLDYLKPLIE EIAKRNKVFH 240 LPKHEVENFI SEMEKGIVLV HKCSKVRKWF NYKKYECTSK LLRLDEYLQR LFIELKGQLE 300 MNVKEVIDSQ TSIEAVIKQI EEGVVVQNGE IESASWSSVP KLLHSQKTKG IRYVIKETLV 360 DSVGIIEEGV KPSEGSDVIQ NQIQSEPLLP TVGLDALNVQ EARDVIKETL ASIRNIEVGV 420 MGTEGRELVV DSTRNVQVTT DVKETLVDST GIIEEGFKPS EGKELAKQLI LNPSATSASP 480 DTREFSMQEK LSSYEEILIG CNAPQTVGGI AHVPDSWGDN DQQDLQDVSK KRKTLAKWTE 540 QVRVSSENGI ERSPLDDGYS WRKYGQKEIL GAKYPRGYYR CTHRNTQGCL ATKQVQRMDE 600 DQTILEITYR GNHTCCQVSK LVPPPSPQQQ E

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

MTSLALNFLG GAPFQLLYDS VKTAIGRTRK FRTHLINLKS TLDCLQIIQQ ISDNNVQLSL  60
PNDITQDVLV KMEDGAALID ELSSLSLCSI HVWGNCCNCI KPNYADQLDE LDRSLRRLLE  120
LLKLEQMRNV TLLMLKLDEV QRGQSDILKT LQENRGARAE QQVIQRIQEN GQHREGNGGG  180
GGGGGAAPAL GAVFGTLVDV VIQVKVKNLI FKRLLGELKS SLDYLKPLIE EIAKRNKVFH  240
LPKHEVENFI SEMEKGIVLV HKCSKVRKWF NYKKYECTSK LLRLDEYLQR LFIELKGQLE  300
MNVKEVIDSQ TSIEAVIKQI EEGVVVQNGE IESASWSSVP KLLHSQKTKG IRYVIKETLV  360
DSVGIIEEGV KPSEGSDVIQ NQIQSEPLLP TVGLDALNVQ EARDVIKETL ASIRNIEVGV  420
MGTEGRELVV DSTRNVQVTT DVKETLVDST GIIEEGFKPS EGKELAKQLI LNPSATSASP  480
DTREFSMQEK LSSYEEILIG CNAPQTVGGI AHVPDSWGDN DQQDLQDVSK KRKTLAKWTE  540
QVRVSSENGI ERSPLDDGYS WRKYGQKEIL GAKYPRGYYR CTHRNTQGCL ATKQVQRMDE  600
DQTILEITYR GNHTCCQVSK LVPPPSPQQQ E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23810.1	3e-41	WRKY family protein