PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G35602

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 428aa MW: 49641 Da PI: 9.3844

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G35602	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.7	1.6e-17	71	159	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +Y Y++ +GF +r ++ +k g+it+r+ vC+kegkre + + +++ r+ + etr++C a + +k +g++ ++++++eHnH+la Ro02_G35602 71 WYTMYGTALGFGTRLQRASKG--FGRITRRRIVCNKEGKREAKWLEkKDRVRNAKRETRCNCLAACCFNFNKdRGTYLISEFKTEHNHDLA 159 79***********987666..999**********9987663567788999**99999998888*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MNSEHQSSID GQYIEVESTH KDSTDTQHEE RVNTGNNNFT STNSVRENFA ELTENDVVGR 60 EFATLEDAEK WYTMYGTALG FGTRLQRASK GFGRITRRRI VCNKEGKREA KWLEKKDRVR 120 NAKRETRCNC LAACCFNFNK DRGTYLISEF KTEHNHDLAM QREVHFIRSN RRVTDADVGH 180 VSAMRTCSIS TSRAYDYLVK SSGGFQFVGY TSKDLFNKIE ANRRAKLING DAQNNLVQRI 240 EEGEVSESLT AWLEMMYRKR ERWAEAFFTG HFFGGMTSTQ RCEGMNNHLK FGIGRYWKIY 300 EILPRLARTL KRMRNDVIKD DFNCRNSSPV LITHMRSLEG KLAHKITHDM YLVARHQIKL 360 EKKFLVVNKI SFTGSFICYV TQIVQTELAK LKITAERFMT EHDATRFETD NSSQNNGSEY 420 HPNVVKDP

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MNSEHQSSID GQYIEVESTH KDSTDTQHEE RVNTGNNNFT STNSVRENFA ELTENDVVGR  60
EFATLEDAEK WYTMYGTALG FGTRLQRASK GFGRITRRRI VCNKEGKREA KWLEKKDRVR  120
NAKRETRCNC LAACCFNFNK DRGTYLISEF KTEHNHDLAM QREVHFIRSN RRVTDADVGH  180
VSAMRTCSIS TSRAYDYLVK SSGGFQFVGY TSKDLFNKIE ANRRAKLING DAQNNLVQRI  240
EEGEVSESLT AWLEMMYRKR ERWAEAFFTG HFFGGMTSTQ RCEGMNNHLK FGIGRYWKIY  300
EILPRLARTL KRMRNDVIKD DFNCRNSSPV LITHMRSLEG KLAHKITHDM YLVARHQIKL  360
EKKFLVVNKI SFTGSFICYV TQIVQTELAK LKITAERFMT EHDATRFETD NSSQNNGSEY  420
HPNVVKDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-16	FAR1 family protein