PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G35385

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 402aa MW: 46606.2 Da PI: 4.3965

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G35385	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	76.4	6.7e-24	8	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkrknr.atksgyWkat 86 l pG+rF P ++el+++yLk+k++g++++ +e+ i e+d+y ePw++ + + a ++k++yfF++++kk+a+g+r +r + + g+Wk + Ro02_G35385 8 LLPGIRFCPMEDELLMYYLKPKMNGQEVPGKEAlICELDLYGDqEPWKIWErfqerR--AndlrKNKDLYFFTQKKKKTAKGSRIRRtVGSGGTWKGQ 103 579**********************9998888**9754975244442..1345466799**************5455889 PP NAM 87 gkdkevlskkgel......vglkktLvfykgrapkgektdWvmheyrl 128 +ev+ ++++ g kk+ ++ ++ + ++ +W+m e++l Ro02_G35385 104 TAPQEVYLLDQNQmptttlLGFKKSYTYK--NEGSVHHGRWIMYEFEL 149 ***9866663444447777777776..45555689*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MESGGRMLLP GIRFCPMEDE LLMYYLKPKM NGQEVPGKEA LICELDLYGD QEPWKIWERF 60 QERRANDLRK NKDLYFFTQK KKKTAKGSRI RRTVGSGGTW KGQTAPQEVY LLDQNQMPTT 120 TLLGFKKSYT YKNEGSVHHG RWIMYEFELD KSQILHKKQV NKNDYVLCLL RKNDELPTKK 180 RKKQQEEEML GDFVRDDDDE DNSSNIDPAF LLEEPQEKRQ RVMPRADDVA PPPFDLAEIE 240 QWYDQQFLQP EADHEAGATP VEAGPVTSQV DQNWGLQQFE AEPQQEEENL GQQSHIPTFA 300 PNEIMGSLDF LPDQNLVQQM GGEVDVYGGN LSDLMVGENW PMSFVEELMN DEQQNTMQVG 360 GDWNDIAYSD FGGVECFDLL HIIIAAKEYW RTLIYENVNL NH

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MESGGRMLLP GIRFCPMEDE LLMYYLKPKM NGQEVPGKEA LICELDLYGD QEPWKIWERF  60
QERRANDLRK NKDLYFFTQK KKKTAKGSRI RRTVGSGGTW KGQTAPQEVY LLDQNQMPTT  120
TLLGFKKSYT YKNEGSVHHG RWIMYEFELD KSQILHKKQV NKNDYVLCLL RKNDELPTKK  180
RKKQQEEEML GDFVRDDDDE DNSSNIDPAF LLEEPQEKRQ RVMPRADDVA PPPFDLAEIE  240
QWYDQQFLQP EADHEAGATP VEAGPVTSQV DQNWGLQQFE AEPQQEEENL GQQSHIPTFA  300
PNEIMGSLDF LPDQNLVQQM GGEVDVYGGN LSDLMVGENW PMSFVEELMN DEQQNTMQVG  360
GDWNDIAYSD FGGVECFDLL HIIIAAKEYW RTLIYENVNL NH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	183	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	5e-18	NAC family protein